Gene Bcav_1906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1906 
Symbol 
ID7858299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp2171216 
End bp2172577 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content71% 
IMG OID643865997 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_002881924 
Protein GI229820398 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3200] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR01358] 3-deoxy-7-phosphoheptulonate synthase, class II 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.040301 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000296805 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGACGATCC CCGCCGACCC GCAGGTCCTC GCCGGCCTCG ACGCCTGGCG CCGGCTGCCG 
GCCGTGCAAC AGCCCGAGTG GCCGGACGCG GCGGTGCTGG CCTCGATCGG CGCCGAGCTG
GCGGCGGCGC CCCCGCTCGT GTTCGCCGGG GAGGCCGACG CGCTGCGCGA GAAGCTGGCC
GCGGCGTCGC GCGGCGAGGC GTTCCTGCTG CAGGGCGGCG ACTGCGCGGA GACGTTCGCC
GAGAGCTCCG CCGACAACAT CCGGAACAAG GTCAAGACCA TCCTCCAGAT GGCCGTCGTG
CTGACGTACG GCGCGAGCCT GCCGATCGTG AAGATGGGCA GGATGGCGGG GCAGTACGCC
AAGCCGCGCA GCACCGGCAC CGAGACGCGT GACGGCGTGA CGCTGCCGGC GTACCGCGGC
GACACGATCA ACGGGCACGA GTTCACGGCC GCGTCACGCA CACCGGACCC CGCTCGGCTG
CTCAAGGCGT ACCACACGTC GGCTGCCACG CTGAACCTCA TCCGCGCCTT CACGATGGGC
GGGTTCGCGG ACCTCCGGCG GGTGCACGAG TGGAACCGCG GCTTCATGAC CAACCCGTCG
TACAAGCAGT ACGACGAGCT CGCGTCCGAG ATCGACCGGG CGATCAGGTT CATGGCCGCC
GCGGGAGCCG ACTTCGACGC GCTCCGCACC GTCGAGTTCT TCTCGAGCCA CGAGGGTCTG
CTGCTCGACT ACGAGCGCCC GCTCACCCGC ATCGACTCCC GGACCGGGCT GCCCTACGAC
TGCTCGGCGC ACTTCCTGTG GATCGGCGAG CGCACCCGCC AGCTGGACGG GGCGCACGTC
GACTTCTTCT CCCGCGTGCA CAACCCGATC GGCGTCAAGC TCGGGCCGAC GACGTCCGGG
GACGACGCCC TCGCGCTGAT GGACGCGCTC AATCCCGACG GCGTCGCGGG GCGGCTCACG
TTCATCACCC GCATGGGTGC TGGCCGGATC CGCGACGCGC TGCCCGGCGT CGTCGAGAAG
GTCGCCGCCG ACGGCCGGCC TGTCGTGTGG GTGTGCGACC CGATGCACGG CAACACGATC
ACGTCGGCGA ACGGCTACAA GACCCGACGG TTCACCGACG TCATCGACGA GGTGCGCGGC
TTCTTCGAGG TGCACGCCGC CACCGGCACC GTGCCGGGTG GGCTGCACGT CGAGCTCACC
GGCGACGACG TGACGGAGGT GCTCGGCGGG GCGGAGGAGA TCGACGACGT CGGGCTCGCC
CGGCGGTACA CGACGCTCGT CGATCCGCGC CTCAACCACC AGCAGTCCCT CGAGATGGCG
TTCCTCGTGG CGGAGATGCT GCGGGAGCGT CCCACCGCGT GA
 
Protein sequence
MTIPADPQVL AGLDAWRRLP AVQQPEWPDA AVLASIGAEL AAAPPLVFAG EADALREKLA 
AASRGEAFLL QGGDCAETFA ESSADNIRNK VKTILQMAVV LTYGASLPIV KMGRMAGQYA
KPRSTGTETR DGVTLPAYRG DTINGHEFTA ASRTPDPARL LKAYHTSAAT LNLIRAFTMG
GFADLRRVHE WNRGFMTNPS YKQYDELASE IDRAIRFMAA AGADFDALRT VEFFSSHEGL
LLDYERPLTR IDSRTGLPYD CSAHFLWIGE RTRQLDGAHV DFFSRVHNPI GVKLGPTTSG
DDALALMDAL NPDGVAGRLT FITRMGAGRI RDALPGVVEK VAADGRPVVW VCDPMHGNTI
TSANGYKTRR FTDVIDEVRG FFEVHAATGT VPGGLHVELT GDDVTEVLGG AEEIDDVGLA
RRYTTLVDPR LNHQQSLEMA FLVAEMLRER PTA