| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1682 |
|---|
| Symbol | |
|---|
| ID | 7859624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1929518 |
|---|
| End bp | 1930345 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643865770 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_002881700 |
|---|
| Protein GI | 229820174 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.299262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGGCGCA CCCGCACCCG CGCCTCGTTC GGCGCGCACC TCGTCGCCGT CGTCCTCATC
CTCGGCACGG TCCTGCCGTT CCTGTGGATG CTGGTGTCGT CGTTCAAGAC ACCGAGCGAG
CTCAACGGCG TCGACAAGCG ACTCCTGCCG TCAGGGCTGT TCCTGGGCAA CTACACGAAG
CTGCTCGACA CCAACTTCCT CACGTACTTC GGGAACTCGG TGATCGTCGC TGCGGCGACG
ACGATCGTCG CGCTGTTGCT GGCGATCCTC GCCGGCTACG GCTTCGCCCG GTTCACCTTC
ATCGGCAACC GGGGCATGCT GCTCGTCGTC GTGGCCGCCC AGATGTTCCC GGCGGTCATG
CTCGCCATCC CGCTCTTCAT CACCGTGAAG AACCTGGGAC TGCTCGACTC GCTCGTCGGG
CTCGTCGTCG TGTACGTCTC GTTCGCGCTG CCGTTCTGCA TCTGGCTCAT GCGCAACTAC
TTTCTCGCCG TCCCGGTGGA GACGGAGGAG GCGGCGCTCA TCGACGGATG CACCCGGTTC
CGCGCGCTGT GGCGCGTCGT GCTGCCGCCG GCGCTGCCTG GCGTCATGGC CGCCGCCGTG
TTCACGATCA TCCAGGTGTG GGAGGAGTTC CTGTACGCAA ACACCTTCAT CGACACGGAC
AGCAAGCGGA CCCTCTCGGT GGGACTCAAC TCGCTCATCG GCGAGTTCAC GACCGACTGG
GGTCGCCTGC TCGCCGCCGG CGTGCTCGTG ATGATCCCGG TGCTGCTCAT CTTCGGGTAC
CTGCAGCGGT ACGTGACGCA GATCGCCGGA GGAGGGGTGA AGGGCTGA
|
|---|
| Protein sequence | MRRTRTRASF GAHLVAVVLI LGTVLPFLWM LVSSFKTPSE LNGVDKRLLP SGLFLGNYTK
LLDTNFLTYF GNSVIVAAAT TIVALLLAIL AGYGFARFTF IGNRGMLLVV VAAQMFPAVM
LAIPLFITVK NLGLLDSLVG LVVVYVSFAL PFCIWLMRNY FLAVPVETEE AALIDGCTRF
RALWRVVLPP ALPGVMAAAV FTIIQVWEEF LYANTFIDTD SKRTLSVGLN SLIGEFTTDW
GRLLAAGVLV MIPVLLIFGY LQRYVTQIAG GGVKG
|
|---|
| |