Gene Bcav_1618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1618 
Symbol 
ID7858814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1862225 
End bp1865059 
Gene Length2835 bp 
Protein Length944 aa 
Translation table11 
GC content75% 
IMG OID643865705 
Productribonuclease, Rne/Rng family 
Protein accessionYP_002881636 
Protein GI229820110 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.127332 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.810349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAGAGC CCACGAACGA AGCGCCCACC AACGACGAGC CCACCGAGGC CGCACCGGCG 
CCACGCCGCC GCGGCCCGCG GCGCGCCAGC CGGGGGGTGA CGACGCCCGT GGCGCCGGAC
CCCGCCGTCG AGGCCGCCGC ACCGGAGCCT GAGCCTGAGC CGGCCCCCGT GCCCGCCCCC
GAGCCCGAGG CGCCGCCCGA GCCCTCCGCC GAGCCGGCCG ACGCCGAGGT GCCGGTCGAG
GACGACGCAC CGCCCTCCCG CGCGACGTTC TCGCACGCGG CACCGCCGGC ACCCGAGCGC
GACGCCGACC AGAGGCTCGA CGTGTTCGCC GCCTTCGGCA TCGGCGCGCA GGCGGCGACG
CCCGAGCCCG CCGCGGCCGA CGAGGTCGTG CCTGCGCCCG AGCCCGCCGC GGCGGACGAG
GACGACGAAG AGCTGCCCGA GGGGGCCGAG GACGCCGAGG ACGGACCCCG TCTGCCGGCT
ACCGCGCTGC TGTTCCAGGC GCCCGAGCCG CGGGCACGCT CCCGGCGTCG GGCGTCGTCG
CCGGCCGGGC CGCCGAGCCC CGAGGATGCC GGCGAGCGAC CGGCCTCCCC GGAGCACGTC
GACGCGCCCT CTGAGGCGGC GGCGTCCGAC GCCCCGGAGG CGGCCGAGCG TCCGAAGCGA
CGCAAGCGCA GGAAGTCGGG CGGCTCGGCC GAGCCCGAGG CCCCGGAGAA GACCGAGGAC
GCCGAGCAGG CGGCCACCGC CGCGCCGGAC GAGGACGAGC CGGCCGACGG CGATGCCGCC
GAGGCCGGCG CCGAGGGCGA GGGCCGCCGT CGTCGTCGCC GCGGAGGGCG GGGCCGCAAG
AAGGCGGCGG CCACCGACGC CGAGGACGAG CCTGCGTCCG CTGCGCCGGA CGAGGCGCCG
GAGGCGGAGC CGGACGCCGA GTCCACGTCG CGACGTCGCC GCCGGCGGCG TTCCGGGCGC
GCCGACGACG GCGCCCGCGC ACGCGACGAG GTGACGGCGC TCAAGGGGTC GACGCGGCTC
GAGGCGAAGC GCCAGCGACG CCGCGAGGGG CGCGACGCCG GACGCCGTCG GACCATCATC
ACGGAGGCGG AGTTCCTCGC CCGCCGCGAG GCCGTCGAAC GCGCGATGGT CGTGCGGGAG
CGCGACGGCC GCACGCAGAT CGCCGTGCTC GAGGACGGCG TGCTCGTGGA GCACTACGTC
GCCCGCAAGC AGCAGTCCTC GATGGTCGGC AACGTGTACC TGGGCCGCGT GCAGAACGTG
CTGCCGAGCA TGGAGGCGGC GTTCGTCGAC CTCGGCAAGG GACGCAACGC GGTGCTGTAC
GCCGGTGAGG TGAACTGGGA CGCCGCCGGG CTCGAGGGGC AGCCGCGCCG GATCGAGCAG
GCGCTGTCGT CCGGCGACTC GGTGCTCGTG CAGGTGACGA AGGACCCGAT CGGCCACAAG
GGCGCGCGAC TCACCTCGCA GATCACGCTC GCCGGGCGCT ACCTCGTGCT CGTGCCGAGC
GGGGCGATGA CGGGGATCTC GCGCAAGCTC CCCGACACCG AGCGCGCCCG CCTGAAGAAG
CTCCTCAAGG AGATCGTCCC CGACGGGCAG GGCGTCATCG TGCGCACGGC CGCGGAAGGG
GCGAGCGAGG ACGAGCTGCG CCGCGACGTC GAACGCCTGA CCAAGCAGTG GGCGGACATC
CAGACGAAGG TCAACGGCTC CGGTGGCACC GGCCGCAAGC CCCAGAAGGT GACGGCGCCT
GCCCTGCTGA AGGGCGAGCC GGAGCTCGCG CTGCGCGTCG TCCGTGACGT GTTCAACGAG
GACTTCTCCT CGCTCACGGT GTCCGGCGAC GAGGCCTGGC ACACGATCTC CGACTACCTC
ACGACCGTCG CGCCCGACCT CGCCCAGCGG CTGACCCACT GGACCGACGA CGCGGACGTG
TTCGCGCGGT TCCGGATCGA CGAGCAGCTC GCCAAGGGGC TCGACCGCAA GGTCTGGCTC
CCGTCCGGCG GCTCGCTCGT CATCGACCGC ACCGAGGCGA TGACCGTCGT CGACGTCAAC
ACCGGGAAGT TCACCGGCTC GGGCGGCACG CTCGAGGAGA CCGTCACCCG GAACAACCTC
GAGGCCGCCG AGGAGATCGT CCGGCAGCTG AGGCTGCGGG ACATCGGCGG GATCATCGTC
ATCGACTTCA TCGACATGGT CCTCGAGTCC AACCGCGACC TCGTGCTGCG GCGGCTCATC
GAGTGCCTCG GCCGGGACCG CACGCGGCAC CAGGTCGCCG AGGTGACCTC CCTCGGTCTC
GTCCAGATGA CGCGCAAGCG CGTCGGGCAG GGCCTCGTCG AGGCGTTCAG CGAGACGTGC
GAGCACTGCC ACGGACGAGG CTTCGTGGTG CACACCGAGC CGTTCGAGGC GCAGCCCGTG
GCGGAGGAGG AGACGCCGCG CGTCGGCCGG CGTCGCGGGT CCCGCTCGCG CGGTGCGGCG
CAGCCCGCGC AGCCGGCGGA GGACGACGCC TCGGCGGCCG CCCGCGAGGC GGTGCGCGCG
ACGCTCGCGA CCATCGCGGC CGCCGCGCAG CACGCGCACG AGAGCACCGA TCGGCCCGAG
GGCGACGACG GCGCGACGCC GTCCGCGGAC GTGACGCCCG CCGAGGTCGA CGAGGTCCAG
CTGGTCGCCG TGGAGTCCGA GGTAGAGCCG GAGCCGGAGT CGCAGGCCGA GGCGGAGCCT
CAGTCCGAGC CCGAGGTGGA GCCAGAGCCG GAGCCTCAGG CAGCGACCGA GGCGGACGGC
GCAGCGCAGG ACGAGCAGCA GCCGGCCGAC GTCGCCGCGG ACCCGGGCGA GGAGACCGAA
CCCAGCGACG CGTGA
 
Protein sequence
MSEPTNEAPT NDEPTEAAPA PRRRGPRRAS RGVTTPVAPD PAVEAAAPEP EPEPAPVPAP 
EPEAPPEPSA EPADAEVPVE DDAPPSRATF SHAAPPAPER DADQRLDVFA AFGIGAQAAT
PEPAAADEVV PAPEPAAADE DDEELPEGAE DAEDGPRLPA TALLFQAPEP RARSRRRASS
PAGPPSPEDA GERPASPEHV DAPSEAAASD APEAAERPKR RKRRKSGGSA EPEAPEKTED
AEQAATAAPD EDEPADGDAA EAGAEGEGRR RRRRGGRGRK KAAATDAEDE PASAAPDEAP
EAEPDAESTS RRRRRRRSGR ADDGARARDE VTALKGSTRL EAKRQRRREG RDAGRRRTII
TEAEFLARRE AVERAMVVRE RDGRTQIAVL EDGVLVEHYV ARKQQSSMVG NVYLGRVQNV
LPSMEAAFVD LGKGRNAVLY AGEVNWDAAG LEGQPRRIEQ ALSSGDSVLV QVTKDPIGHK
GARLTSQITL AGRYLVLVPS GAMTGISRKL PDTERARLKK LLKEIVPDGQ GVIVRTAAEG
ASEDELRRDV ERLTKQWADI QTKVNGSGGT GRKPQKVTAP ALLKGEPELA LRVVRDVFNE
DFSSLTVSGD EAWHTISDYL TTVAPDLAQR LTHWTDDADV FARFRIDEQL AKGLDRKVWL
PSGGSLVIDR TEAMTVVDVN TGKFTGSGGT LEETVTRNNL EAAEEIVRQL RLRDIGGIIV
IDFIDMVLES NRDLVLRRLI ECLGRDRTRH QVAEVTSLGL VQMTRKRVGQ GLVEAFSETC
EHCHGRGFVV HTEPFEAQPV AEEETPRVGR RRGSRSRGAA QPAQPAEDDA SAAAREAVRA
TLATIAAAAQ HAHESTDRPE GDDGATPSAD VTPAEVDEVQ LVAVESEVEP EPESQAEAEP
QSEPEVEPEP EPQAATEADG AAQDEQQPAD VAADPGEETE PSDA