| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1406 |
|---|
| Symbol | |
|---|
| ID | 7861706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1602341 |
|---|
| End bp | 1604050 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643865489 |
|---|
| Product | dihydroxy-acid dehydratase |
|---|
| Protein accession | YP_002881426 |
|---|
| Protein GI | 229819900 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
|---|
| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGA CCCCCGACAC CGCTCCGGAC ATCAAGCCCC GCTCGCGCCA GGTCACCGAC
GGCCTGGAGG CGACCGCAGC ACGGGGGATG CTCCGCGCCG TCGGCCTCGG CGACGAGGAC
TTCGCGAAGC CGCAGATCGG CGTCGCGAGC TCGTGGAACG AGATCACGCC GTGCAACCTG
TCGCTCGACC GGCTCGCCGA CGCCGTCAAG AGCGGTGTGC ACGCGGCCGG CGGCTACCCG
CTCGAGTTCG GCACGATCTC CGTGTCGGAC GGCATCTCGA TGGGCCACGA GGGGATGCAC
TTCTCGCTGG TGTCGCGCGA GGTGATCGCC GACTCCGTGG AGACCGTCAT GCAGGCGGAG
CGACTGGACG GCTCCGTGCT GCTCGCCGGG TGCGACAAGT CCCTCCCCGG GATGCTCATG
GCGGCCGCGC GGCTCGACCT CGCGAGCGTG TTCCTGTACG CCGGCTCGAT CATGCCCGGC
TGGGTGAAGC TCTCGGACGG CACCGAGAAG GACGTGACGA TCATCGACGC GTTCGAGGCC
GTCGGGGCGT GCGCGCGCGG GCTCATGAGC CGCGAGGACG TCGACCGCAT CGAGCGGGCC
ATCTGCCCCG GCGAGGGCGC GTGCGGCGGG ATGTACACGG CGAACACCAT GGCGTCGGTG
GCCGAGGCGA TGGGCATGTC GATCCCGGGA TCGGCGGCGC CGCCGTCGGC CGACCGTCGC
CGCGACGCGT TCGCGCACCG CAGCGGTGAG GCGGTCGTCG AGATGCTCCG GCAGGGGATC
ACCGCACGGC AGGTCATGAC GAAGGAGGCG TTCGAGAACG CGATCGCCGT CGTCATGGCG
TTCGGGGGCT CCACGAACGC CGTCCTCCAC CTGCTCGCGA TCGCCTACGA GGCCGAGGTG
GACCTGACGC TCGGCGACTT CCAGCGCGTC GCGGCGCGGG TCCCGCACCT CGGCGATCTC
AAGCCGTTCG GCCGGTACGT GATGAACGAC GTCGACCGTA TCGGGGGCGT CCCGGTCGTC
ATGAAGGCGC TGCTCGACGC CGGGCTCCTG CACGGGGACT GCCTGACCGT CACGGGGCGG
ACCGTCGCGG AGAACCTCGA GGCCATCGCG CCCCCTGACC CGGACGGAAA GATCCTGCGT
GCGCTGGACA ACCCCATCCA TCGCACCGGC GGCATCAGCA TCCTGCACGG CACCCTCGCG
CCCGAAGGCG CCGTCGTGAA GTCCGCGGGG TTCGACTCGG ACGTGTTCGA GGGCACGGCG
CGCGTGTTCG ACCGGGAGCG GGCCGCCATG GACGCGCTCG AGGACGGCAC GATCACCGAC
GGCGACGTCG TCGTCATCCG GTACGAGGGG CCGAAGGGCG GCCCTGGGAT GCGCGAGATG
CTCGCGATCA CGGGCGCCAT CAAGGGCGCC GGCCTGGGCA AGACGGTGCT GCTGCTCACC
GACGGCCGGT TCTCGGGCGG CACGACGGGG TTGTGTGTCG GGCACGTCGC ACCGGAGGCC
GTCGACGCCG GGCCGATCGC GTTCGTGCGT GACGGCGACC CGATCCGGCT CGACGTCGCG
AACGCCACGC TGGACCTCCT CGTCGCCCCG GCGGAGCTCG AGGCCCGCCG CGCCGGCTGG
GAGCCGCTCC CGCCCAGGTA CACCCGGGGG GTGCTGGCGA AATACGCCAA GCTCGTCGGG
TCGGCGTCGA CGGGTGCGGT GCTGGAGTGA
|
|---|
| Protein sequence | MTATPDTAPD IKPRSRQVTD GLEATAARGM LRAVGLGDED FAKPQIGVAS SWNEITPCNL
SLDRLADAVK SGVHAAGGYP LEFGTISVSD GISMGHEGMH FSLVSREVIA DSVETVMQAE
RLDGSVLLAG CDKSLPGMLM AAARLDLASV FLYAGSIMPG WVKLSDGTEK DVTIIDAFEA
VGACARGLMS REDVDRIERA ICPGEGACGG MYTANTMASV AEAMGMSIPG SAAPPSADRR
RDAFAHRSGE AVVEMLRQGI TARQVMTKEA FENAIAVVMA FGGSTNAVLH LLAIAYEAEV
DLTLGDFQRV AARVPHLGDL KPFGRYVMND VDRIGGVPVV MKALLDAGLL HGDCLTVTGR
TVAENLEAIA PPDPDGKILR ALDNPIHRTG GISILHGTLA PEGAVVKSAG FDSDVFEGTA
RVFDRERAAM DALEDGTITD GDVVVIRYEG PKGGPGMREM LAITGAIKGA GLGKTVLLLT
DGRFSGGTTG LCVGHVAPEA VDAGPIAFVR DGDPIRLDVA NATLDLLVAP AELEARRAGW
EPLPPRYTRG VLAKYAKLVG SASTGAVLE
|
|---|
| |