Gene Bcav_1236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1236 
Symbol 
ID7859547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1398659 
End bp1399504 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content68% 
IMG OID643865320 
ProductABC-2 type transporter 
Protein accessionYP_002881258 
Protein GI229819732 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component 
TIGRFAM ID[TIGR00025] ABC transporter efflux protein, DrrB family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCGC AGGCCACGGG GGCCGAGAAC CCGACCCTGA CCACCACGGC GCTGCGCGAG 
GCCGTGGCGC TCCCCGTCCG GCCCAGTCGC CCGTCGGCCT TCTCCATGAC GCTGACGTTC
GCGTGGCGCG CGCTGCTGAA GATCAAGCAC GTGCCGGAGC AGCTCTTCGA CGTGCTCGTG
TCGCCGATCA TCTTCACGCT GATGTTCACG TACCTGTTCG GCGGGGCGCT GGCCGGGTCG
ACGACGGCGT ACATCCAGTT CCTGCTGCCG GGGATCCTCG TGCAGACGAT CGTCATCGTC
ACCGTCTACA CGGGCTACAC GCTGAACACG GACATCACCA AGGGTGTCTT CGACCGGTTC
CGGTCGCTGC CGATCTGGCG CCCGGCACCC ATCGTCGGCG CGCTGCTCGG CGACACCGTC
CGCTATTCGA TCGCGTCGGT GGTGTGCATC GCGCTCGGCC TGGTCATCGG GTTCCGGCCC
GCGGGCGGGG TGGTGGGCGT GGTGCTCGGC GTGCTCCTGC TGCTGGTGTT CGCATTCTCG
CTGAGCTGGA TCTTCACGAT CCTCGGCCTG CTGCTGCGGA CGCCGAACGC CGTGATGGGC
GTGTCGATGA TGGTGCTGAT GCCGCTGACG TTCGCGTCGA ACATCTTCGT GGACCCGGCC
ACCATGCCGA CGGCCCTGCA GCGGTTCGTC GAGGTCAACC CGGTCACGCA CCTGGTGACG
GCGGTACGCG GGCTGATGGC GGGGACGCCG GACACCGGGG AGATCGTGTG GGTGCTCGTC
TCGGCGGTCG TCCTGACGGC CGTGCTCTCG CCCATCACGA TGCGGCTGTA CCGCACGCGC
CACTGA
 
Protein sequence
MTAQATGAEN PTLTTTALRE AVALPVRPSR PSAFSMTLTF AWRALLKIKH VPEQLFDVLV 
SPIIFTLMFT YLFGGALAGS TTAYIQFLLP GILVQTIVIV TVYTGYTLNT DITKGVFDRF
RSLPIWRPAP IVGALLGDTV RYSIASVVCI ALGLVIGFRP AGGVVGVVLG VLLLLVFAFS
LSWIFTILGL LLRTPNAVMG VSMMVLMPLT FASNIFVDPA TMPTALQRFV EVNPVTHLVT
AVRGLMAGTP DTGEIVWVLV SAVVLTAVLS PITMRLYRTR H