Gene Bcav_1122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_1122 
Symbol 
ID7859976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp1262217 
End bp1264118 
Gene Length1902 bp 
Protein Length633 aa 
Translation table11 
GC content71% 
IMG OID643865206 
ProductGTP-binding protein TypA 
Protein accessionYP_002881144 
Protein GI229819618 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01394] GTP-binding protein TypA/BipA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGTGC GCTCTGACCT GCGCAATGTC GCGATCGTCG CACACGTCGA TCACGGCAAG 
ACCACGCTCG TCGACTCGAT GCTGTGGCAG ACGGGCGCGT TCGGCGCTCA CGACCACGTC
GGCGAACGCG CGATGGACTC TGGCGACCTC GAGCGCGAGA AGGGCATCAC GATCCTCGCG
AAGAACACCG CCATCGCCTA CTCAGGGCCG AGCGCCGCCG CTGCCGGGCA CCCCGAGGGC
GTCACCATCA ACGTCATCGA CACGCCTGGT CACGCGGACT TCGGCGGCGA GGTGGAACGC
GGGCTCTCGA TGGTCGACGG CGTGGTGCTC CTCGTCGACG CGTCGGAAGG CCCGCTGCCG
CAGACCCGCT TCGTGCTCCG CAAGGCGATC GCCGCCCGCC TGCCCGTGAT CCTCGTGGTC
AACAAGGTGG ACCGACCGGA CAGCCGGATC GAGGAGGTCG TCGGTGAGAC CACCGACCTG
CTCCTGGCGC TCGCCAGCGA CCTCGAGGAC GAGGACATCG ACCTCGACGC CGTCCTCGAC
GTCCCGGTCG TGTACGCCGC GGCGAAGGTC GGGAGGGCGT CCACGACGCC GCCCGCCGAC
GGCGGCATGC CTGACGGGAC GGACCTCGAG CCGCTCTTCG CGACGATCCT CGAGCGGATC
CCGGCGCCGT CGTACGACGA CGGCGCTCCC CTCCAGGCGC ACGTGACGAA CCTCGATGCG
TCGCCGTTCC TGGGCCGCCT CGCGCTGCTG CGGGTGTTCA ACGGCACGCT GCGCAAGGGT
CAGACGGTCT CCTGGGCGCG TCGCGACGGC TCGCTCACCC AGGTGCGGGT GAGCGAGCTC
CTCGCCACCA AGGCGCTCGA CCGCGTGCCC GCCGAGAGCG CCGGCCCGGG GGACATCGTC
GCCGTCGCCG GCATCGAGGA CATCACCATC GGCGAGTCGC TCGTCGACCC GGACGACCCT
CGTCCGCTGC CGCTCATCAC CGTCGACGAC CCGGCGATCT CCATGACGAT CGGGATCAAC
ACGTCCCCGC TGGCCGGCCG CGTGAAGGGG GCCAAGGTGA CCGCGCGGCA GGTCAAGGAC
CGCCTCGACC GCGAGCTCGT CGGCAACGTC TCGCTGCGGG TGCTCCCCAC CGGTCGCCCG
GACTCGTGGG AGGTCCAGGG CCGCGGCGAG CTCGCGCTCG CGATCCTCGT CGAGCAGATG
CGCCGCGAGG GCTTCGAGCT CACGGTCGGC AAGCCCCAGG TCGTGACACG CGAGATCGAC
GGCCGCACCC ACGAGCCGGT CGAGCGGATG ACGATCGACG TCCCCGAGGA GTACCTCGGT
TCCGTCACCC AGCTGCTCGC CCAGCGCAAG GGCCGCATGG AGACGATGAC GAACCACGGC
ACCGGCTGGG TGCGGATGGA GTTCCTCGTG CCGGCCCGTG GGCTCATCGG GTTCCGGACG
CAGTTCCTCA CCGACACGCG CGGCACGGGC ATCGCGTCGT CGATCGCGGA GGGGTACGAG
CCGTGGGCCG GGCCGATCGA GTTCCGCACG GCCGGGTCGC TCGTGGCCGA CCGCGCGGGC
GCCGTGACGG CTTTCGCTCT CATCAACCTG GGTGACCGCG GGACGTTCTT CGTCTCGCCG
GGCCAGGAGG TCTACGAGGG CATGGTCGTC GGCGAGAACA ACCGCGCCGA CGACATGGAC
GTCAACATCA CGCGCGAGAA GAAGCTGAAC AACATCCGGT CCTCGACCGG GGACGAGCTC
GAGCGGCTCA CGCCTCCGCG CCGGCTCACC CTGGAGGAGT CCCTGGAGTT CGCCCGCGAC
GACGAGTGCG TCGAGGTCAC GCCGGAGGCG ATCCGCATCC GCAAGGTCGT GCTCGACCAG
ACGGAACGCG GCCGGGCTGC GTCGCGGGCG AAGCGCGCCT GA
 
Protein sequence
MPVRSDLRNV AIVAHVDHGK TTLVDSMLWQ TGAFGAHDHV GERAMDSGDL EREKGITILA 
KNTAIAYSGP SAAAAGHPEG VTINVIDTPG HADFGGEVER GLSMVDGVVL LVDASEGPLP
QTRFVLRKAI AARLPVILVV NKVDRPDSRI EEVVGETTDL LLALASDLED EDIDLDAVLD
VPVVYAAAKV GRASTTPPAD GGMPDGTDLE PLFATILERI PAPSYDDGAP LQAHVTNLDA
SPFLGRLALL RVFNGTLRKG QTVSWARRDG SLTQVRVSEL LATKALDRVP AESAGPGDIV
AVAGIEDITI GESLVDPDDP RPLPLITVDD PAISMTIGIN TSPLAGRVKG AKVTARQVKD
RLDRELVGNV SLRVLPTGRP DSWEVQGRGE LALAILVEQM RREGFELTVG KPQVVTREID
GRTHEPVERM TIDVPEEYLG SVTQLLAQRK GRMETMTNHG TGWVRMEFLV PARGLIGFRT
QFLTDTRGTG IASSIAEGYE PWAGPIEFRT AGSLVADRAG AVTAFALINL GDRGTFFVSP
GQEVYEGMVV GENNRADDMD VNITREKKLN NIRSSTGDEL ERLTPPRRLT LEESLEFARD
DECVEVTPEA IRIRKVVLDQ TERGRAASRA KRA