| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_1013 |
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| Symbol | |
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| ID | 7859786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | + |
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| Start bp | 1153699 |
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| End bp | 1157316 |
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| Gene Length | 3618 bp |
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| Protein Length | 1205 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 643865097 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002881036 |
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| Protein GI | 229819510 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0526678 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCA CCGGACTCCT ACCCGTCCTG GGCTCGGACG CGGCCGTCGC GCGCCTCGTC
GAGGAGCTGC CCGCCCGCGG ATCGCTCGAC GCGATCGCGT CGGCCGGCGT GCGGCCCGCC
CTGCTCGCGC AGCTGCTCGG TGCGGATCAC CCGCGGCCGC TCGTCGTCGT CACGGCAACG
GGCCGCGAGG CCGACGAGCT GGCGGCGGCG CTGCGCTGCT ACGTGCCGGA CGACGACGTC
GCCGTGCTCC CCGCGTGGGA GACGCTGCCG CACGAGCGCC TCAGCCCGCG CAGCGACACC
GTGGCGCGGC GCCTCGCCGT CCTGCGCCGG CTCGCGCACC CGGCCACCGG TGCCGACGCG
CAGCCGCACA CGGGCCCGAT CCGCGCGCTC GTGCTGCCGG TGCGCGCCAT GCTGCAGCCG
GTCGTGACCG GTCTCGGGGA CCTCGAACCG GTGAGCGTCC AGGTGGGCGA GACCGTCGAC
CTCGAGGACC TCGCGGCGAG GCTGACGGCG GCGGCGTACA CGCGCACCGA CATGGTGGAG
CGGCGCGGCG ACTTCGCCGT CCGCGGCGGC ATCCTCGACG TCTTCCCGCC CACGGAGGAC
CACCCCCTGC GGCTCGACTT CTGGGGCGAT GAGGTCGAGG AGATCCGCTG GTTCGCCGTC
GCCGACCAGC GCAGCCTCGA GATCGCGCCC GGCGGGCTGT GGGCTCCGCC CTGCCGCGAG
CTGCTCCTCA CACCCGAGGT GCGAGCGCGG GCGCTGGAGC TGCGCGCGCA GCTGCCGGGC
GCCGTCGACA TGCTCGAGAA GATGTCCGAG GGCATCGCCG TGGAGGGGAT GGAGTCGCTG
GCCCCGGCGC TCGTGGACGG CATGGAGCAG GTGCTCGAGC TCGTGCCCGA CGACGCCCTG
CTCGTCCTCG CCGACCCGGA GCGCGTGCGC CGGCGCGCGC ACGACCTCGT CGCCACGACC
GAGGAGTTCC TGGCGGCGGC GTGGACCTCC GCGGCCGCCG GTGGCGCGAC GCCGCTCGAC
CTGTCGGCGG CGAGCTTCGC CACGATCGCC GATGCGCGCG ACGTCGCCCT GCGCCGCGGC
CTCGGCTGGT GGACGCTCAC CCCGTTCACG GCCGACGCCG AGCTCGCCGA CTTCATGGAG
GAGGACGCCG ACGGCGGCGG CTCGACCACC GTCGTCACGA TCCCCACCCG CGACGTCGAG
GGCTACCACG GCGAGATCTC CCGCGCCGTC GCGGACCTCC AGGGGCTCAC GCACGACGGC
TGGCGCCTCG TGCTCACCAC CGAGGGCGCC GGCCCGGCGC GCCGCATGGT GGAGCAGCTG
CTCGCCGCGG ACGTCCCGGC CCGCCTGGAA CCCGACGTCG AGGACGAGCC CGAGACGGGC
GTCGTCCACG TGACGACGGC GGTCATCGGC AAGGGCTTCG TGGCGCCGGA GCTGCGCCTC
GCCCTGTTCT CCGAGGCCGA CCTCACCGGT CGCGCCGGCA CGTCCACGAA AGACATGCGC
GCGCTCGCTC CGAAGCGGCG CAACGTCGTC GACCCGCTCG CGCTGCGAAC CGGCGACCAC
GTGGTGCACG AGCAGCACGG CGTCGGGCGG TTCGTGGAGC TCGTGCAGCG CTCCATCGGG
TCGGGTCCCG CCGCGGCGAC CCGCGAGTAC CTCGTCATCG AGTACGCGGC CTCGAAGCGG
GGCCAGCCCG GCGACCGGCT CTACGTGCCG ACCGACGCGC TCGACCAGGT CACGAAGTAC
ACCGGCGGGG AGTCGCCGTC GCTCAACAAG ATGGGCGGCT CCGACTGGGC GAAGACGAAG
GGCCGCGCCC GCAAGGCGGT CCGGGAGATC GCCGGCGAGC TCATCCGCCT GTACTCGGCG
CGGATGGCGA CGCAGGGCTT CGCGTTCTCC CCGGACACGC CGTGGCAGCG CGAGCTCGAG
GACGCGTTCC CGCACATCGA GACGCCGGAC CAGGTCGTCA CGATCGACGA GGTGAAGGCG
GACATGGAGA AGTCGGTCCC GATGGACCGC CTCGTGTGCG GCGACGTCGG CTACGGCAAG
ACGGAGATCG CGATCCGTGC GGCGTTCAAG GCCGTCCAGG ACGGCAAGCA GGTGGCCGTG
CTCGTGCCCA CCACGCTGCT CGTGCAGCAG CACTTCGAGA CGTTCTCCGA GCGGTACGCC
GGGTTCCCGG TGACGGTGAA GGCGCTGTCC CGGTTCCAGA CCGACGCCGA GGCGACGGCG
GTGCGCGAGG GGGTGCAGGA CGGCTCGGTC GACGTCGTCA TCGGTACCCA CCGGCTCCTC
ACCGGCGAGG TGCGGTTCAA GGACCTGGGG CTCGTCGTCG TCGACGAGGA GCAGCGGTTC
GGCGTCGAGC ACAAGGAGAC GCTCAAGCAG CTGCGGACGA ACGTGGACGT GCTCGCGATG
AGCGCGACGC CGATCCCGCG GACGCTCGAG ATGGCGGTGA CGGGCATCCG GGAGATGTCC
ACGCTGGCGA CGCCGCCCGA GGAGCGCCAT CCGGTGCTCA CGTTCGTCGG GGCGTACGAG
GAGAAGCAGA TCGCCGCGGC GATCCGGCGG GAGCTGCTCC GCGAGGGGCA GGTGTTCTAC
GTCCACAACC GGGTGGAGTC GATCGAGCGG GCGGCCGCCC GGCTGCAGGA GCTCGTGCCC
GAGGCGAGGA TCGCCGTCGC CCACGGGAAG ATGAACGAGC ACCAGCTCGA GCGCGTCATC
GTCGACTTCT GGGAGAAGCG GTTCGACGTG CTGGTGTGCA CCACGATCAT CGAGACCGGC
CTCGACATCT CGAACGCGAA CACGCTCATC CTCGAGCGGG CCGACGTGCT GGGGCTCTCG
CAGCTGCACC AGCTCCGGGG CCGGGTCGGG CGCGGCCGGG AGCGTGCCTA CTCGTACTTC
CTGTACCCGC CGGAGAAGCC GCTCACGGAG ACCGCGCACG ACCGGCTCGC GACCATCGCC
GCCAACACCG ACCTGGGCTC CGGCATGCAG GTGGCGCTCA AGGACCTCGA GATCCGGGGT
GCCGGCAACC TGCTCGGTGG CGAGCAGTCG GGTCACATCG CCGGGGTCGG CTTCGACCTC
TACGTGCGGA TGGTGTCCGA GGCCGTGGCG CGGTTCCGCG GCGAGGAGAC GGAAGACATC
ACGGACGTCA CGATCGAGCT GCCGATCGAC GCCCACGTCC CGCACGACTA CATCGCGCAC
GAGCGTCTGC GGCTCGAGGC GTACGCGAAG GTCGCCGCCG CCCGTGACGA GACGGCGATC
GCGGCGGTGC GCGACGAGCT GGCCGACCGC TACGGACCGG TTCCCGAACC GGTGGAGCGG
CTGTTCGCCG TCGCCGCCCT GCGGGCCAAG GCGCGCGCGC ACGGACTCAC GGACGTCACC
GTGCAGGGGC AGTTCGTGCG GTTCGCCCCG GTGGAGCTCC CGGAGTCCGC ACAGCTGCGC
CTCAAGCGGC TGTACCCGCG ATCGGTGCTC AAGCCGGGCG TGCGCACGAT CCTCGTGCCG
CGGCCGACGA CGGCGCTGAT CGGCGGGCAG CCGCTGCGGG ACTCCGAGCT GCTCACGTGG
GTGAGCGAGG TCATCGACGC GATCCTCGGC GGGTCGGTCG AGGCGGCGGC AGCGCTCGCG
ACGGCGTCGC GCGGCTGA
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| Protein sequence | MKLTGLLPVL GSDAAVARLV EELPARGSLD AIASAGVRPA LLAQLLGADH PRPLVVVTAT
GREADELAAA LRCYVPDDDV AVLPAWETLP HERLSPRSDT VARRLAVLRR LAHPATGADA
QPHTGPIRAL VLPVRAMLQP VVTGLGDLEP VSVQVGETVD LEDLAARLTA AAYTRTDMVE
RRGDFAVRGG ILDVFPPTED HPLRLDFWGD EVEEIRWFAV ADQRSLEIAP GGLWAPPCRE
LLLTPEVRAR ALELRAQLPG AVDMLEKMSE GIAVEGMESL APALVDGMEQ VLELVPDDAL
LVLADPERVR RRAHDLVATT EEFLAAAWTS AAAGGATPLD LSAASFATIA DARDVALRRG
LGWWTLTPFT ADAELADFME EDADGGGSTT VVTIPTRDVE GYHGEISRAV ADLQGLTHDG
WRLVLTTEGA GPARRMVEQL LAADVPARLE PDVEDEPETG VVHVTTAVIG KGFVAPELRL
ALFSEADLTG RAGTSTKDMR ALAPKRRNVV DPLALRTGDH VVHEQHGVGR FVELVQRSIG
SGPAAATREY LVIEYAASKR GQPGDRLYVP TDALDQVTKY TGGESPSLNK MGGSDWAKTK
GRARKAVREI AGELIRLYSA RMATQGFAFS PDTPWQRELE DAFPHIETPD QVVTIDEVKA
DMEKSVPMDR LVCGDVGYGK TEIAIRAAFK AVQDGKQVAV LVPTTLLVQQ HFETFSERYA
GFPVTVKALS RFQTDAEATA VREGVQDGSV DVVIGTHRLL TGEVRFKDLG LVVVDEEQRF
GVEHKETLKQ LRTNVDVLAM SATPIPRTLE MAVTGIREMS TLATPPEERH PVLTFVGAYE
EKQIAAAIRR ELLREGQVFY VHNRVESIER AAARLQELVP EARIAVAHGK MNEHQLERVI
VDFWEKRFDV LVCTTIIETG LDISNANTLI LERADVLGLS QLHQLRGRVG RGRERAYSYF
LYPPEKPLTE TAHDRLATIA ANTDLGSGMQ VALKDLEIRG AGNLLGGEQS GHIAGVGFDL
YVRMVSEAVA RFRGEETEDI TDVTIELPID AHVPHDYIAH ERLRLEAYAK VAAARDETAI
AAVRDELADR YGPVPEPVER LFAVAALRAK ARAHGLTDVT VQGQFVRFAP VELPESAQLR
LKRLYPRSVL KPGVRTILVP RPTTALIGGQ PLRDSELLTW VSEVIDAILG GSVEAAAALA
TASRG
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