| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0997 |
|---|
| Symbol | |
|---|
| ID | 7859770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | + |
|---|
| Start bp | 1129936 |
|---|
| End bp | 1133388 |
|---|
| Gene Length | 3453 bp |
|---|
| Protein Length | 1150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643865081 |
|---|
| Product | PKD domain containing protein |
|---|
| Protein accession | YP_002881020 |
|---|
| Protein GI | 229819494 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3291] FOG: PKD repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.014339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACT CCACACGCCG GAGCAGCGTG CTGGCGATGG CCGCCGCGCT CGCGACAGCC
GTGACGGCGT TCGTCGTCGC GCCCGCGGCC CAGGCGGCTC CGCCGTTCGA CGACCTGCCC
GAGACCGTCA GCGCCGACGC CCTCGCCGCC CCGCAGATGA ACGGCGTCGT GTGGCGGCAG
GTGGTGGCCG GCTCGACGGT GTTCGCGGTC GGCGAGTTCA CCCGGGCGCG CCCGTACGGC
TCGGCCGCCG GCCAGAACGA GGTCGTGCGC TCCCACGTCC TCGCCTACAA CATCGACACC
GGCGCCATGA CGTCGTTCGC CCCCACGATC AACGCGCAGG TGATGGACGC CGCTGTCTCG
CCCGACGGCA ACACGCTCTA CCTGGTGGGC CAGTTCACGC AGGTCAACGG GCAGTCGCGC
TACCGGATCG CGGCGTTCGA CGTCGCCTCG GGAGCCCTGC TGCCGTTCCG GCCGGTCGTC
AACACGCGCA TCACGTCGGT CACCGCGACG AGCTCGACCG TCTACTTCGG CGGCCCGTTC
ACCACGGTCA ACGGGCAGCA GCGCACGCGG GTGGCCGCCG TCAACGCCGG CACCGGCACC
ACGAACACGC CCCTGTCGGC GTCGATCCCG GACGGCGACG TCCGCGGCGT CGCGCTCGCG
CCCGACGGGA ACGCGCTGGT GATCGCCGGC AGCTTCACGA GCGTCAACGG CTCCAACAAC
CCCGGCTACG GGCTGGCCCG CCTCGCGACG TCGAACGGTG CCTCGCTCTC CTTCCCGGTC
AACGCCATCG TGCGCAACGC CACCGTGAAC GCGGCGATCT ACTCGCTGAA GTCCGACGAG
AACGGCGTGT ACGGCACCGG CTACGACTAC TACGGTCCCG GGAACCTCGA AGGCTCGTTC
CACGCGGACT GGGAGGGCAA CCTCGAGTGG ATCGACGGGT GCATGGGCGA CACGTACGAC
GTGTGGCCCG ACGGCGACGT CGTGTACCAG GCGTCCCACA AGCACAACTG CTCCCAGATC
GGCGGCTTCC CGCAGGAGCA GCCGTGGACG TACCACAACG CCACAGCGAT GACGAACTAC
GCGACGGGGA CGAACGTCGG CGGGCTGCAG CCGGGCCAGC CGGCTCCGAA GATGCTGGCG
TTCAAGCCGG AGTTCCAGGG CGGCACGTAC ACGCCGTCCC GCCAGGCGGT CTGGACCGTC
ACGGGGAACG ACGACTACAT CCTGTACGCC GGTGAGTTCG TCCGGGTCAA CGGCGTGCTC
CAGCAGGGCC TCACCCGGTT CGCGCGGCGC GACGTCGCCC CGAACGACCA GGGCCCGCGC
ATCCGCGACG CGGCCACGAA CCCGACCGTC GCCGCCGTGC CGTTCGCCGG GCTGCGGGTC
TCCTGGACCG CCAACTGGGA CCGCGACGAC GACCACCTGC GCTACCAGGT CTACCGGAAC
GACATGAACA CGCTCGTGTA CGACCAGGTG CTCCGCGCCG ACTACTGGTC GCTGCCCACG
TTCGGCTTCA TCGACTCCGA CCTGGCCCAG GGTCAGAGCG CTCAGTACCG GCTCCGCACC
ACGGACCCGT CGGGCAACTC GACGATCTCC GCCTGGGTGT CGGGCACCGC GGGGACCGTG
GGCACGTCGA CGACCTACTC CGAGGAGGTC CGGGCGGACG CGCCGGCCCA CTACTGGCCG
CTCGGCGAGC CCAGCGGCAC GCGCGCCTAC GACTGGGGCG GTGGCGCTGA CCTCACGCTG
ACGTCGCAGG TCGCCCGCAA CGTCGAGGGT GCGATCACCG GCGACGCCGG GTCGCGGTTC
ACCGGATCGA CGAACTCGTA CGGCTCCACG ACGGCACGCG AGGGCGGGCC TCAGGAGTTC
TCCGTCGAGG CGTGGTTCCG CCGGACGGGT TCCGGCGGCG GGAAGATCGT CGGCTTCGGC
AGCTCCTCGT CCGGGAACAG CTCGAACTAC GACCGCCACA TCTACATGGA CGCCGGCGGC
CGCGTGATCT TCGGTGTCTA CCCGGGCACG GAACGGACGA TCAGCACGAG CGGCGCGTAC
AACGACGGCG AGTGGCACCA CGTCGTCGGC ACGCTCAGCC CGACGGGCAT GCGGTTCTAC
CTCGACGGCG AGCTCGTCGG GGAGCGGACC GACACGACGT CGGCCCAGCC GTACACGGGG
TACTGGCGCG TCGGCGGCGA CTCCACGTGG TCGGGGAACC GGTACTTCAA CGGGTCCATC
GACGAGGTCG CCGTGTACTC GCGAGCTCTC GACGCCGCGA CCGTGGCGCA CCACTACACG
GTCGGCAGCA CGGGCGTGGT GCCGAACCAG GCGCCGACCG CGTCGTTCAC GGCCGGCGTC
ACGGGCCTCG GGGTCTCCGT CGACGCGTCC GCGTCGTCCG ACCCGGACGG CTCGATCGCG
TCGTACGCCT GGACGTTCGG TGACGGGCAG AGCGGGACGG GGGCGACGGC GTCGCACACG
TATGCGGCCG CCGGCACCTA CACGGTCACG CTGACGGTGA CGGACGACGA CGGCGCGCCC
GCGTCGACGA CCCGGCAGGT CACGGTGACG GCGCCGCCCC CGAACGTCGC ACCGACCGCC
TCCTTCACGT CGTCCGCGAC GCACCTGGCC GCGTCGTTCA ACGCCTCGGC GTCGTCCGAC
CCGGACGGCA CGATCGCCGC GTACGCGTGG GACTTCGATG ACGGGCAGAC CGGGACCGGC
GCGACGCCGT CGCACACGTA CGCGGCCGCC GGCACCTACA CGGTGACGCT GACGGTGACG
GACGACGACG GCGCGACCGA CTCGGTCAGC GGCGACGTCA CGGTGACGGC GCCCCCGGCG
AACGCGCCGA TCGCGATCGA CACGTTCGGC CGCACGCAGG CGAACGGGTG GGGCACGGCC
ACGACGGGCG GCGCGTGGAC GCCGACCGCG GGCACGGCTG CTCGGTTCCT CACGGACGGC
GACCGAGGGG TGCAGGTCCT GCACGCCCCG GGTGCCACCA CCGGGATCCA GCTCGCGGGC
GTGAGCCAGA CGAACGTCGA GGTCCGGGCG ACGCTCTCCG CGGACGTGGT CCCGACGGGC
GGCGGCGCGT ACCTCATGGT CACCGGACGG CGGGTCGGCA CGGCCGAGTA CACGGCTCGC
CTCCACGTGC AGGCGAGCGG CGCGGTGGCG GTCCACCTGC TGCGGGCCGG GACACCGGTC
GTCGGCGGGG TGGTGCCCGG CCTGAGCTTC GCGGGCGGTG ACGAGATCAA CGTCGCGTTC
CAGGTCGTCG GCACGTCACC GACCCAGCTG AGGGTGCGCG TCTGGGAGGG CGGCACGCCC
GAACCGGCCG GATGGACGTA CTCGACCACG GACTCCACCG CGAGCCTGCA GGCCGCGGGC
AGCATCGGCT TCGGCGCCTA CCTCAGCGGG TCGGCGACGA ACGCGCCGGT GCGGGTCTCC
GTGGACGACC TCGACGCGAG CCCGGTCCAG TGA
|
|---|
| Protein sequence | MKHSTRRSSV LAMAAALATA VTAFVVAPAA QAAPPFDDLP ETVSADALAA PQMNGVVWRQ
VVAGSTVFAV GEFTRARPYG SAAGQNEVVR SHVLAYNIDT GAMTSFAPTI NAQVMDAAVS
PDGNTLYLVG QFTQVNGQSR YRIAAFDVAS GALLPFRPVV NTRITSVTAT SSTVYFGGPF
TTVNGQQRTR VAAVNAGTGT TNTPLSASIP DGDVRGVALA PDGNALVIAG SFTSVNGSNN
PGYGLARLAT SNGASLSFPV NAIVRNATVN AAIYSLKSDE NGVYGTGYDY YGPGNLEGSF
HADWEGNLEW IDGCMGDTYD VWPDGDVVYQ ASHKHNCSQI GGFPQEQPWT YHNATAMTNY
ATGTNVGGLQ PGQPAPKMLA FKPEFQGGTY TPSRQAVWTV TGNDDYILYA GEFVRVNGVL
QQGLTRFARR DVAPNDQGPR IRDAATNPTV AAVPFAGLRV SWTANWDRDD DHLRYQVYRN
DMNTLVYDQV LRADYWSLPT FGFIDSDLAQ GQSAQYRLRT TDPSGNSTIS AWVSGTAGTV
GTSTTYSEEV RADAPAHYWP LGEPSGTRAY DWGGGADLTL TSQVARNVEG AITGDAGSRF
TGSTNSYGST TAREGGPQEF SVEAWFRRTG SGGGKIVGFG SSSSGNSSNY DRHIYMDAGG
RVIFGVYPGT ERTISTSGAY NDGEWHHVVG TLSPTGMRFY LDGELVGERT DTTSAQPYTG
YWRVGGDSTW SGNRYFNGSI DEVAVYSRAL DAATVAHHYT VGSTGVVPNQ APTASFTAGV
TGLGVSVDAS ASSDPDGSIA SYAWTFGDGQ SGTGATASHT YAAAGTYTVT LTVTDDDGAP
ASTTRQVTVT APPPNVAPTA SFTSSATHLA ASFNASASSD PDGTIAAYAW DFDDGQTGTG
ATPSHTYAAA GTYTVTLTVT DDDGATDSVS GDVTVTAPPA NAPIAIDTFG RTQANGWGTA
TTGGAWTPTA GTAARFLTDG DRGVQVLHAP GATTGIQLAG VSQTNVEVRA TLSADVVPTG
GGAYLMVTGR RVGTAEYTAR LHVQASGAVA VHLLRAGTPV VGGVVPGLSF AGGDEINVAF
QVVGTSPTQL RVRVWEGGTP EPAGWTYSTT DSTASLQAAG SIGFGAYLSG SATNAPVRVS
VDDLDASPVQ
|
|---|
| |