| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0984 |
|---|
| Symbol | |
|---|
| ID | 7859756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 1116480 |
|---|
| End bp | 1117217 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 643865067 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_002881007 |
|---|
| Protein GI | 229819481 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.50937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00233885 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCCAGC AGGCGGACGG CGAGGACGAC GCGGCGCAGA CGGGCGTCGG CGGTGCCGCA
TCCGGGGCGC CGACCGCACG TCGTGCCCGG GCGCGCAGCA CGTCCCGCGC CCGCATGACG
GGCCGCGAGC GGCGTGCCCA GCTGCTCGAC GTCGGGCGGG CCCTGTTCGC CGCCAAGGGG
TTCGACGGCA CGAGCGTCGA GGAGATCGCC GCACGAGCCC AGGTCTCGAA GCCTGTGGTC
TACGAGCACT TCGGCGGCAA GGAGGGGATG TACGCGGTCA TCGTCGACCG CGAGGTCGAA
CGCCTCACGG GCATGCTCAC GGGCTCCCTC GAGCCGGAGC GGCACCCGAA GGTGATCGTG
GAGGCGACGA CGCTCGCGCT CCTCGACTAC ATCGAGCAGA ACACCGACGG CTTCCGGATC
CTCGTGCGCG ACTCGCCGGT GGCGCAGGCG ACCGGTACGT TCTCCTCGCT CATCGGCGAC
GTGGCGACGC AGGTCGAGCA CCTCCTGGCG GACCAGTTCG ACCGGCGCGG GTTCGATCCT
GCGACAGCGC CGATGTACGC GCAGATGCTC GTGGGCATGA TCGCGCTGAC GGGCCAGTGG
TGGCTCGAGG CGCGGACCCC GGACAAGTCG GTGGTCGCCG CCCACCTCGT CAACCTCGCG
TGGAACGGCC TGCACGGGCT CGAGGCGGAT CCCCAGCTGA CCCCGCGCGG CAAGGCCGCC
GCCGCCCGCC GGGACTGA
|
|---|
| Protein sequence | MTQQADGEDD AAQTGVGGAA SGAPTARRAR ARSTSRARMT GRERRAQLLD VGRALFAAKG
FDGTSVEEIA ARAQVSKPVV YEHFGGKEGM YAVIVDREVE RLTGMLTGSL EPERHPKVIV
EATTLALLDY IEQNTDGFRI LVRDSPVAQA TGTFSSLIGD VATQVEHLLA DQFDRRGFDP
ATAPMYAQML VGMIALTGQW WLEARTPDKS VVAAHLVNLA WNGLHGLEAD PQLTPRGKAA
AARRD
|
|---|
| |