Gene Bcav_0653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_0653 
Symbol 
ID7858454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp727701 
End bp730151 
Gene Length2451 bp 
Protein Length816 aa 
Translation table11 
GC content74% 
IMG OID643864733 
ProductATP-dependent DNA ligase 
Protein accessionYP_002880677 
Protein GI229819151 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAGCGG GTGACGGCGG CGCGCGGGTA CGCGTCGACG GCCGCGTGCT CTCGCTGACC 
AACCTCGACA AGGTCCTGTT CCCGGCCACG GGCACCACGA AGGCCGAGCT CATCGACTAC
TACCGGCGGA TCGCTCCGGT GATGATCCCG CACCTCGCGG GCCGCGCCGT GACGCGCAAG
CGCTGGCCGA ACGGCGTCGA GACCGAGCCG TTCTTCACGA AGAACCTCGA CTCCGGGACG
CCCGACTGGG TGCCGCGCCG CGGGATCGTC CACCACGAGC GGACCAGCAC GTACCCGCTG
GTGGAGGACA CGGCCACGCT CGTGTGGCTC GCGCAGATGG CCAGCATCGA GCTGCACGTG
CCGCAGTGGC GCTTCCCGCC GGGTGACTCA CCGTTCGTGC TCGACGGGAG CGCCACGCGG
CCCGACCGGT TCGTGCTCGA CCTCGACCCG GGCCCCGGCG TCGGGCTCGC GCAGTGCGCG
GAGGTGGCGC TCGCGGCGAA GGGGTACCTC GACGACGTCG GGCTCGCCGC CATCCCCGTG
ACGAGCGGCA GCAAGGGCCT GCACCTGTAC GCCACGATCC ACGGCGTCAG CTCGGAGCAG
GCGAGCGCGT TCGCGAAGGA GCTGGCCGGG CACCTCGCGG AGGACCTTCC GCAGCTCGTG
GTCACGCAGA TGAAGCGGTC GCTCCGCGAC GGCAAGGTGT TCGTCGACTA CTCGCAGAAC
AACGCCGCGA AGACCACCGT CTCGCCGTAC TCGGTGCGCG GGCGGGACCA GCCGTGGGTC
GCCGCGCCAC GCACGTGGGG GGAGCTCGGG GAACCGGGAC TCGCACACCT CGAGCTCGGC
GAGGTGCTGG AGCGTGCCGC CGACGGCGAC CTGCTCGCAC CCCTGCTGCC GCCGGACCCG
CTGTCCACCT ACCGCGCGAA GCGGGACTCG GCGAGGACGC CCGAGCCGGT CCCGTTCGCC
GCGCCCGTGG CGGCGCCGGC CGGGGATCCT CGGTTCGTCA TCCAGGAGCA CCACGCGCGT
CGGCTGCACT GGGACCTGCG GCTGGAGCAC GACGGCGTGC TGGCGTCGTG GGCGGTGCCG
CGCGGCGTGC CGACGACGAC GGGACACAAC CGCCTCGCCG TCCACACCGA GGACCACCCG
ATGGAGTACC TCACGTTCCA CGGGTCGATC CCGAAGGGGG AGTACGGCGG CGGCGAGATG
ACCGTGTGGG ACACCGGGAC GTACACGCCG GAGAAGTTCC GCGACGACGA GGTCATCTTC
GTGCTGCACG GCCAGCGGGT GCAGGGGCGG TTCGCCCTCA TCCGCACCGA CCCGGGTCGG
GGTGGGGGCA AGGAGCAGTG GCTGCTGCAC CTCATGAAGG ACCAGTCCGG CGTGGCGACG
TCGCCGGAGA AGCGGGCGCA CGCCGTCGTC GACGCTCCCG ACGCGGCTGC CGACGACGGC
GCTCACATCT CGCTCAGCGA CGCCGTCGAA CCCCGCCGCA TCGCTCCCGA CCTGAGACCG
ATGCTCGCCA CCGCGGGCCA GGTCGGCGAC GGCGACTACC CGGCGCGGGA GTGGGCGTTC
GAGCCGAAGT GGGACGGCTA CCGGGCGCTG GTCCGGTTCT CCGCGCGCGG CGTGGCCCTG
CAGTCGCGGT CGGGGCGGGA CTTCACGCAG GAGTTCGCGG AGCTGGCCGT CGTGCCCGAG
GAGCTCGCCG CGCACGCCGG CGTCCTGGAC GCGGAGATCG TGGCGCTCGA CGCCGCCGGC
CGCCCGAGCT TCCACGCCCT CCAGGAACGG GGCACCGGCG CCCGCCCCGC GATGCGGCTG
CTCGTGTTCG ACGTGCTGCA CCTCGACGGC ACCTCGCTCG TCAACAAGAG GTACAGCGAC
CGCCGCCAGG TGCTGCTCGC CCTGCCGCTC CCGGCCGCCG ACCCGGACCA TCTGGGCCGC
GAGGAGCGCG ACGTCGGCGG GTGGCGCCGG TCGGTCACCA TCGGCACGTC GGTGCGGGCG
GCACTGCGCG CGAGCGCGGA GGCCCGCCTC GAGGGCGTCA TCGCGAAGCG CCTCGACGCG
CGCTACCTGC CGGGCCGCCG CGGGCACGCC TGGGTCAAGC TCAAGCACTC GCTCGACGCC
GAGGTGGTGA TCGGCGGGTG GCGGCCCGGT CAGGGCAGGC GGGCCGGGGG GATCGGCTCG
CTGCTGCTGG GGGTGCCCGA CGACGACGGC GGCTTGCGGT ACGTGGGCAA GGTCGGGACG
GGTTTCACGG ACGCCGCGCT GGACGCGCTC CTGGCGACGC TCGAGCCGCG GGAGCGGACG
ACGTCGCCGT TCACCACCGA GGTGCCTCGC GTCGAGGCGA AGGTCGCGCA CTGGGTGCGG
CCCGACGTCG TCGGCGAGGT GACGTTCGAC TCGTGGACCG ACGACGGCGT GCTGCGCGCT
GCGAGGTGGC GCGGGCTGCG GCCGGACAAG GCGCCGGCGG ACCTGGCCTG A
 
Protein sequence
MAAGDGGARV RVDGRVLSLT NLDKVLFPAT GTTKAELIDY YRRIAPVMIP HLAGRAVTRK 
RWPNGVETEP FFTKNLDSGT PDWVPRRGIV HHERTSTYPL VEDTATLVWL AQMASIELHV
PQWRFPPGDS PFVLDGSATR PDRFVLDLDP GPGVGLAQCA EVALAAKGYL DDVGLAAIPV
TSGSKGLHLY ATIHGVSSEQ ASAFAKELAG HLAEDLPQLV VTQMKRSLRD GKVFVDYSQN
NAAKTTVSPY SVRGRDQPWV AAPRTWGELG EPGLAHLELG EVLERAADGD LLAPLLPPDP
LSTYRAKRDS ARTPEPVPFA APVAAPAGDP RFVIQEHHAR RLHWDLRLEH DGVLASWAVP
RGVPTTTGHN RLAVHTEDHP MEYLTFHGSI PKGEYGGGEM TVWDTGTYTP EKFRDDEVIF
VLHGQRVQGR FALIRTDPGR GGGKEQWLLH LMKDQSGVAT SPEKRAHAVV DAPDAAADDG
AHISLSDAVE PRRIAPDLRP MLATAGQVGD GDYPAREWAF EPKWDGYRAL VRFSARGVAL
QSRSGRDFTQ EFAELAVVPE ELAAHAGVLD AEIVALDAAG RPSFHALQER GTGARPAMRL
LVFDVLHLDG TSLVNKRYSD RRQVLLALPL PAADPDHLGR EERDVGGWRR SVTIGTSVRA
ALRASAEARL EGVIAKRLDA RYLPGRRGHA WVKLKHSLDA EVVIGGWRPG QGRRAGGIGS
LLLGVPDDDG GLRYVGKVGT GFTDAALDAL LATLEPRERT TSPFTTEVPR VEAKVAHWVR
PDVVGEVTFD SWTDDGVLRA ARWRGLRPDK APADLA