Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_0653 |
Symbol | |
ID | 7858454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | + |
Start bp | 727701 |
End bp | 730151 |
Gene Length | 2451 bp |
Protein Length | 816 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 643864733 |
Product | ATP-dependent DNA ligase |
Protein accession | YP_002880677 |
Protein GI | 229819151 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAGCGG GTGACGGCGG CGCGCGGGTA CGCGTCGACG GCCGCGTGCT CTCGCTGACC AACCTCGACA AGGTCCTGTT CCCGGCCACG GGCACCACGA AGGCCGAGCT CATCGACTAC TACCGGCGGA TCGCTCCGGT GATGATCCCG CACCTCGCGG GCCGCGCCGT GACGCGCAAG CGCTGGCCGA ACGGCGTCGA GACCGAGCCG TTCTTCACGA AGAACCTCGA CTCCGGGACG CCCGACTGGG TGCCGCGCCG CGGGATCGTC CACCACGAGC GGACCAGCAC GTACCCGCTG GTGGAGGACA CGGCCACGCT CGTGTGGCTC GCGCAGATGG CCAGCATCGA GCTGCACGTG CCGCAGTGGC GCTTCCCGCC GGGTGACTCA CCGTTCGTGC TCGACGGGAG CGCCACGCGG CCCGACCGGT TCGTGCTCGA CCTCGACCCG GGCCCCGGCG TCGGGCTCGC GCAGTGCGCG GAGGTGGCGC TCGCGGCGAA GGGGTACCTC GACGACGTCG GGCTCGCCGC CATCCCCGTG ACGAGCGGCA GCAAGGGCCT GCACCTGTAC GCCACGATCC ACGGCGTCAG CTCGGAGCAG GCGAGCGCGT TCGCGAAGGA GCTGGCCGGG CACCTCGCGG AGGACCTTCC GCAGCTCGTG GTCACGCAGA TGAAGCGGTC GCTCCGCGAC GGCAAGGTGT TCGTCGACTA CTCGCAGAAC AACGCCGCGA AGACCACCGT CTCGCCGTAC TCGGTGCGCG GGCGGGACCA GCCGTGGGTC GCCGCGCCAC GCACGTGGGG GGAGCTCGGG GAACCGGGAC TCGCACACCT CGAGCTCGGC GAGGTGCTGG AGCGTGCCGC CGACGGCGAC CTGCTCGCAC CCCTGCTGCC GCCGGACCCG CTGTCCACCT ACCGCGCGAA GCGGGACTCG GCGAGGACGC CCGAGCCGGT CCCGTTCGCC GCGCCCGTGG CGGCGCCGGC CGGGGATCCT CGGTTCGTCA TCCAGGAGCA CCACGCGCGT CGGCTGCACT GGGACCTGCG GCTGGAGCAC GACGGCGTGC TGGCGTCGTG GGCGGTGCCG CGCGGCGTGC CGACGACGAC GGGACACAAC CGCCTCGCCG TCCACACCGA GGACCACCCG ATGGAGTACC TCACGTTCCA CGGGTCGATC CCGAAGGGGG AGTACGGCGG CGGCGAGATG ACCGTGTGGG ACACCGGGAC GTACACGCCG GAGAAGTTCC GCGACGACGA GGTCATCTTC GTGCTGCACG GCCAGCGGGT GCAGGGGCGG TTCGCCCTCA TCCGCACCGA CCCGGGTCGG GGTGGGGGCA AGGAGCAGTG GCTGCTGCAC CTCATGAAGG ACCAGTCCGG CGTGGCGACG TCGCCGGAGA AGCGGGCGCA CGCCGTCGTC GACGCTCCCG ACGCGGCTGC CGACGACGGC GCTCACATCT CGCTCAGCGA CGCCGTCGAA CCCCGCCGCA TCGCTCCCGA CCTGAGACCG ATGCTCGCCA CCGCGGGCCA GGTCGGCGAC GGCGACTACC CGGCGCGGGA GTGGGCGTTC GAGCCGAAGT GGGACGGCTA CCGGGCGCTG GTCCGGTTCT CCGCGCGCGG CGTGGCCCTG CAGTCGCGGT CGGGGCGGGA CTTCACGCAG GAGTTCGCGG AGCTGGCCGT CGTGCCCGAG GAGCTCGCCG CGCACGCCGG CGTCCTGGAC GCGGAGATCG TGGCGCTCGA CGCCGCCGGC CGCCCGAGCT TCCACGCCCT CCAGGAACGG GGCACCGGCG CCCGCCCCGC GATGCGGCTG CTCGTGTTCG ACGTGCTGCA CCTCGACGGC ACCTCGCTCG TCAACAAGAG GTACAGCGAC CGCCGCCAGG TGCTGCTCGC CCTGCCGCTC CCGGCCGCCG ACCCGGACCA TCTGGGCCGC GAGGAGCGCG ACGTCGGCGG GTGGCGCCGG TCGGTCACCA TCGGCACGTC GGTGCGGGCG GCACTGCGCG CGAGCGCGGA GGCCCGCCTC GAGGGCGTCA TCGCGAAGCG CCTCGACGCG CGCTACCTGC CGGGCCGCCG CGGGCACGCC TGGGTCAAGC TCAAGCACTC GCTCGACGCC GAGGTGGTGA TCGGCGGGTG GCGGCCCGGT CAGGGCAGGC GGGCCGGGGG GATCGGCTCG CTGCTGCTGG GGGTGCCCGA CGACGACGGC GGCTTGCGGT ACGTGGGCAA GGTCGGGACG GGTTTCACGG ACGCCGCGCT GGACGCGCTC CTGGCGACGC TCGAGCCGCG GGAGCGGACG ACGTCGCCGT TCACCACCGA GGTGCCTCGC GTCGAGGCGA AGGTCGCGCA CTGGGTGCGG CCCGACGTCG TCGGCGAGGT GACGTTCGAC TCGTGGACCG ACGACGGCGT GCTGCGCGCT GCGAGGTGGC GCGGGCTGCG GCCGGACAAG GCGCCGGCGG ACCTGGCCTG A
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Protein sequence | MAAGDGGARV RVDGRVLSLT NLDKVLFPAT GTTKAELIDY YRRIAPVMIP HLAGRAVTRK RWPNGVETEP FFTKNLDSGT PDWVPRRGIV HHERTSTYPL VEDTATLVWL AQMASIELHV PQWRFPPGDS PFVLDGSATR PDRFVLDLDP GPGVGLAQCA EVALAAKGYL DDVGLAAIPV TSGSKGLHLY ATIHGVSSEQ ASAFAKELAG HLAEDLPQLV VTQMKRSLRD GKVFVDYSQN NAAKTTVSPY SVRGRDQPWV AAPRTWGELG EPGLAHLELG EVLERAADGD LLAPLLPPDP LSTYRAKRDS ARTPEPVPFA APVAAPAGDP RFVIQEHHAR RLHWDLRLEH DGVLASWAVP RGVPTTTGHN RLAVHTEDHP MEYLTFHGSI PKGEYGGGEM TVWDTGTYTP EKFRDDEVIF VLHGQRVQGR FALIRTDPGR GGGKEQWLLH LMKDQSGVAT SPEKRAHAVV DAPDAAADDG AHISLSDAVE PRRIAPDLRP MLATAGQVGD GDYPAREWAF EPKWDGYRAL VRFSARGVAL QSRSGRDFTQ EFAELAVVPE ELAAHAGVLD AEIVALDAAG RPSFHALQER GTGARPAMRL LVFDVLHLDG TSLVNKRYSD RRQVLLALPL PAADPDHLGR EERDVGGWRR SVTIGTSVRA ALRASAEARL EGVIAKRLDA RYLPGRRGHA WVKLKHSLDA EVVIGGWRPG QGRRAGGIGS LLLGVPDDDG GLRYVGKVGT GFTDAALDAL LATLEPRERT TSPFTTEVPR VEAKVAHWVR PDVVGEVTFD SWTDDGVLRA ARWRGLRPDK APADLA
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