Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcav_0617 |
Symbol | |
ID | 7861081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Beutenbergia cavernae DSM 12333 |
Kingdom | Bacteria |
Replicon accession | NC_012669 |
Strand | - |
Start bp | 684895 |
End bp | 686637 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 643864697 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_002880641 |
Protein GI | 229819115 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGAGCA TCGATGACAT CTACCGAGCG GCACAGGCGT CGCAGGTGTC GATCGTCGTC ACCGACGCGC GCGAGGACGA CGAGCCGATC GTCTGGGTCA ACGAGGCCTT CACGCGCACC ACCGGGTACG CGCGCGACGC CGCGCTCGGC CGCAACTGCC GGTTCCTGCA GGGCCCCGCC ACCGACCCGG CCGCCGTCGC GCGCCTCGGC CTGGCGGTGC GCGCCGACGA GCCGGTCGCT GCCGCGCTCC TCAACTACCG CCCCGACGGC ACGCCGTTCT GGAACGACGT CTCCATCTCG CCCGTGCGCG ACGACGCCGG CGCCGTGACC CACCACGTCG GCGTCCAGGT CGACGTCACC GCGCGCGCCG ACGCCGAGCG GGAGCGCGAC CGGGTGATCT CCGCGTCACG GACCGCCCAG CGCCGGCTCG AGCTGCTCCG GCGCATCGGC GACGACCTCC ACGGCGTGTT CGACGCCGAC GCCGAGGCGG CGATGCTGCC CGGGATCCTC GTGCCGGAGC TGGCGGACTG GGCGATGGTC GTGTCGCTCG ACGACGCCGG GCGCCTCCGT CCGCCGCACG TCGCCACCGT GGGCGGCGGG TCGGGACCGG CGCACGAGGC AGCCGCCGTG CTGACGTCGC TCGGTCGCGG CGACCTGGAC CCCTCGGGTG CGCTCTCGCG CCTGCTCGTC AGCGACGACG GCGCCCTGCT CGTCAGCTCT GAGGTCGCCG CCTGGTGGGG CCGCCAGACG CTCCGCGACG ACGTCCCGGC CGCCGTCGCC ACGCTCGGCG CGCACCACGT CGTCGCCGTG CCGCTCGACG CCCGCGGCGC CCGCCTCGGG GTGCTCGTGC TCGGCGCCGG CGACGCGCGC CACCTCGACG AACGGGACCT CGCGACCGCC CGCATGGCGG CGTCGCGGGC CGCCGTCGCG CTCGACAACG CGCGCCTCTA CCGCCGGGAG TCCAGCCGCG TGCGGGACCT GCAGCGCACC CTCGTGCCGC ACCTCACCCC GCTCGACGGC CTGGAGATCG CCACCCACTA CGGCCCCGCC GACGCCACCG ACGTGGGCGG CGACTGGTTC GACGCGTTCC GGGCGAACGA CGGCAACGTC GGCATCGTGA TCGGCGACGT CGCCGGGCAC GACCTGCGGG CCGCAGGCTC CATGGGCCAG CTGCGCTCGC TCATCCGTGC CCGCGCCTGG GGCGGGACCG GCCCGGGCCG CACGCTGACC GAGGTCGACG CGATCGCCCA GGACCTCGGC TCGATCGACC TCAGCACCTG CCTGTACGCG CACCTGGAGC GCGTGGCCGA CGACGACGGC GAGCACGTCG TCGTCGGGTG GGCGCGCGCG GCCCACCCGC CCATGCTCGC CGTCACCCCC GACGGCGTCG TCCACGTGCT CGACGGCGGC CTGTCCACCC CGATCGGCCT CACCCACCCG CACGGCGAGC GGCCCGAGAT GCACGCCGCG TTCCCGCTGG GCACCACACT GGTGCTCTGC ACCGACGGCC TGGTCGAGCG CCGCGAGGAG AGCCTCGAGG CGGGTCTGGC GCGCCTCGCC GCCGCGGTCG GCGAGATGCC CGACGCGCCC GTCGAGGCGG TGCGCGACCA CGTCGTGTCG CAGCTGGAGC CCGAGGGCGG GTGGCGGGAC GACACGACCC TCGTCGTCGC GCGTGTCGTG GCTCTTCCCG CCGACGGGCA GCAGGAGCCC GACCTGGTGC GCCGCGGGCC AGGAGGGTCA TAA
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Protein sequence | MTSIDDIYRA AQASQVSIVV TDAREDDEPI VWVNEAFTRT TGYARDAALG RNCRFLQGPA TDPAAVARLG LAVRADEPVA AALLNYRPDG TPFWNDVSIS PVRDDAGAVT HHVGVQVDVT ARADAERERD RVISASRTAQ RRLELLRRIG DDLHGVFDAD AEAAMLPGIL VPELADWAMV VSLDDAGRLR PPHVATVGGG SGPAHEAAAV LTSLGRGDLD PSGALSRLLV SDDGALLVSS EVAAWWGRQT LRDDVPAAVA TLGAHHVVAV PLDARGARLG VLVLGAGDAR HLDERDLATA RMAASRAAVA LDNARLYRRE SSRVRDLQRT LVPHLTPLDG LEIATHYGPA DATDVGGDWF DAFRANDGNV GIVIGDVAGH DLRAAGSMGQ LRSLIRARAW GGTGPGRTLT EVDAIAQDLG SIDLSTCLYA HLERVADDDG EHVVVGWARA AHPPMLAVTP DGVVHVLDGG LSTPIGLTHP HGERPEMHAA FPLGTTLVLC TDGLVERREE SLEAGLARLA AAVGEMPDAP VEAVRDHVVS QLEPEGGWRD DTTLVVARVV ALPADGQQEP DLVRRGPGGS
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