Gene Bcav_0617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_0617 
Symbol 
ID7861081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp684895 
End bp686637 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content76% 
IMG OID643864697 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002880641 
Protein GI229819115 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGAGCA TCGATGACAT CTACCGAGCG GCACAGGCGT CGCAGGTGTC GATCGTCGTC 
ACCGACGCGC GCGAGGACGA CGAGCCGATC GTCTGGGTCA ACGAGGCCTT CACGCGCACC
ACCGGGTACG CGCGCGACGC CGCGCTCGGC CGCAACTGCC GGTTCCTGCA GGGCCCCGCC
ACCGACCCGG CCGCCGTCGC GCGCCTCGGC CTGGCGGTGC GCGCCGACGA GCCGGTCGCT
GCCGCGCTCC TCAACTACCG CCCCGACGGC ACGCCGTTCT GGAACGACGT CTCCATCTCG
CCCGTGCGCG ACGACGCCGG CGCCGTGACC CACCACGTCG GCGTCCAGGT CGACGTCACC
GCGCGCGCCG ACGCCGAGCG GGAGCGCGAC CGGGTGATCT CCGCGTCACG GACCGCCCAG
CGCCGGCTCG AGCTGCTCCG GCGCATCGGC GACGACCTCC ACGGCGTGTT CGACGCCGAC
GCCGAGGCGG CGATGCTGCC CGGGATCCTC GTGCCGGAGC TGGCGGACTG GGCGATGGTC
GTGTCGCTCG ACGACGCCGG GCGCCTCCGT CCGCCGCACG TCGCCACCGT GGGCGGCGGG
TCGGGACCGG CGCACGAGGC AGCCGCCGTG CTGACGTCGC TCGGTCGCGG CGACCTGGAC
CCCTCGGGTG CGCTCTCGCG CCTGCTCGTC AGCGACGACG GCGCCCTGCT CGTCAGCTCT
GAGGTCGCCG CCTGGTGGGG CCGCCAGACG CTCCGCGACG ACGTCCCGGC CGCCGTCGCC
ACGCTCGGCG CGCACCACGT CGTCGCCGTG CCGCTCGACG CCCGCGGCGC CCGCCTCGGG
GTGCTCGTGC TCGGCGCCGG CGACGCGCGC CACCTCGACG AACGGGACCT CGCGACCGCC
CGCATGGCGG CGTCGCGGGC CGCCGTCGCG CTCGACAACG CGCGCCTCTA CCGCCGGGAG
TCCAGCCGCG TGCGGGACCT GCAGCGCACC CTCGTGCCGC ACCTCACCCC GCTCGACGGC
CTGGAGATCG CCACCCACTA CGGCCCCGCC GACGCCACCG ACGTGGGCGG CGACTGGTTC
GACGCGTTCC GGGCGAACGA CGGCAACGTC GGCATCGTGA TCGGCGACGT CGCCGGGCAC
GACCTGCGGG CCGCAGGCTC CATGGGCCAG CTGCGCTCGC TCATCCGTGC CCGCGCCTGG
GGCGGGACCG GCCCGGGCCG CACGCTGACC GAGGTCGACG CGATCGCCCA GGACCTCGGC
TCGATCGACC TCAGCACCTG CCTGTACGCG CACCTGGAGC GCGTGGCCGA CGACGACGGC
GAGCACGTCG TCGTCGGGTG GGCGCGCGCG GCCCACCCGC CCATGCTCGC CGTCACCCCC
GACGGCGTCG TCCACGTGCT CGACGGCGGC CTGTCCACCC CGATCGGCCT CACCCACCCG
CACGGCGAGC GGCCCGAGAT GCACGCCGCG TTCCCGCTGG GCACCACACT GGTGCTCTGC
ACCGACGGCC TGGTCGAGCG CCGCGAGGAG AGCCTCGAGG CGGGTCTGGC GCGCCTCGCC
GCCGCGGTCG GCGAGATGCC CGACGCGCCC GTCGAGGCGG TGCGCGACCA CGTCGTGTCG
CAGCTGGAGC CCGAGGGCGG GTGGCGGGAC GACACGACCC TCGTCGTCGC GCGTGTCGTG
GCTCTTCCCG CCGACGGGCA GCAGGAGCCC GACCTGGTGC GCCGCGGGCC AGGAGGGTCA
TAA
 
Protein sequence
MTSIDDIYRA AQASQVSIVV TDAREDDEPI VWVNEAFTRT TGYARDAALG RNCRFLQGPA 
TDPAAVARLG LAVRADEPVA AALLNYRPDG TPFWNDVSIS PVRDDAGAVT HHVGVQVDVT
ARADAERERD RVISASRTAQ RRLELLRRIG DDLHGVFDAD AEAAMLPGIL VPELADWAMV
VSLDDAGRLR PPHVATVGGG SGPAHEAAAV LTSLGRGDLD PSGALSRLLV SDDGALLVSS
EVAAWWGRQT LRDDVPAAVA TLGAHHVVAV PLDARGARLG VLVLGAGDAR HLDERDLATA
RMAASRAAVA LDNARLYRRE SSRVRDLQRT LVPHLTPLDG LEIATHYGPA DATDVGGDWF
DAFRANDGNV GIVIGDVAGH DLRAAGSMGQ LRSLIRARAW GGTGPGRTLT EVDAIAQDLG
SIDLSTCLYA HLERVADDDG EHVVVGWARA AHPPMLAVTP DGVVHVLDGG LSTPIGLTHP
HGERPEMHAA FPLGTTLVLC TDGLVERREE SLEAGLARLA AAVGEMPDAP VEAVRDHVVS
QLEPEGGWRD DTTLVVARVV ALPADGQQEP DLVRRGPGGS