| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0444 |
|---|
| Symbol | |
|---|
| ID | 7860704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Beutenbergia cavernae DSM 12333 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012669 |
|---|
| Strand | - |
|---|
| Start bp | 493106 |
|---|
| End bp | 495922 |
|---|
| Gene Length | 2817 bp |
|---|
| Protein Length | 938 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 643864522 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_002880469 |
|---|
| Protein GI | 229818943 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3903] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.192623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.240024 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCACCC TGCCCGCGGA AGCGGTGACC CCTCGCGAGC ACGACGTCCT GGTCGGTGTG
GCGCAGCACC TGACGAACGC ACAGATCGCC CGGGACCTGC ACCTGTCGGT CCGCACCGTC
GAGACCCATG TCTCGGCGCT GCTGCGCAAG CTCGGTGTCG CGAGCCGGCG CGACCTCGCG
GCGACCGCCG CGGGGCTCAC GGCTCGCCCG GACGGGAGTG CCCGGCCCGC CGATCACGAC
GGGCCTCGAC GCGTACCCGG ACCTCACCGG CACTCGCTGC GCAGCGCCGG GACGCCGTCG
GGTGTGATCG GCCTGCCCGC GCCCCGCACG TCGTTCGTCG GCCGACGTGC TGAGGTCGAC
GCCGCCACCC GGCTGGCGCA GGAGTCGCGC CTGACGACGA TCGTCGGCCC GGGCGGTGCC
GGGAAGACGC GGCTCGCCAT CGCCGCGACG ACGGCGGTGG CGCCGGCGTT CCCGTCAGGC
GGAGCGTACG TGGACCTCGT CCCGACCCGG CCGGGACACG TCGACGAGGC CGTCGCCACA
GCGCTCGGGG TGACGGAGGG CCCGGGGCAG ACGCTGCGGC AGGCGCTCGC GGCCGCTCTT
CGAGGTCGGG TGCTCCTCGT GCTCGACAAC GCCGAGCACC TCGTCGACGA CGTCACCGGG
CTCGTCGAGG ACCTCCTCGA TGCCTGTCCG GGGCTGAGCA TCGTGGCCAC GAGCCGAGAG
CGTCTCGCCG TCGCCGGTGA GACGGTCCTC CTGCTCGGGC CGCTGCACGT GGCCGACGAG
GCCGTCGTGC TGTTCACCGA GCGTGCCCGC GACGGCGACC CGGCATTCGC TGCCGAGCCC
GCCGACGTCG AGGACCTGTG CCGGCGTCTG GACTGCTCAC CGCTCGCGAT CGAGCTCGCC
GCAGCCCGGG TCGCCTCCCT GGGAGTCGCC GGGCTCCGGG CCGGCCTCGC CGACCAGCTG
CGCGTCGTCG CCGCGTCGCG AGGCGGGCAC GAGCGGCACC GCTCGCTCCG CGCCGTCATC
GAGTGGAGCC ATCGCCTGCT CGCCGCGGAC GAGCGGTACG TGCTCGCCCG GACGTCGCTC
TTCGCCGGCT CGTTCACGCT CTCCTCGGCG GCCGCGCTCT GCCCGGACCT GGCGCCCGGC
ACGGTGGCCG ACGTCGTCGG CCGGCTCGGC GACAAGAGCC TCGTGCACCG CGCGGAGGAC
GCCGCCCGAT GGACGCTCCT GGCGAGCGTC CGCCAGTTCG CCCGTGAGCA GCTCGACGCG
TCCGACGACG CGGGGCGCAC CGTCGGGCTC TACCGCACCT GGGCGGCGTC GACTGCCGCG
GACCTGAGGC GCCGCATGGC GTCCGGCGCG GACTGGTGGG ACGCCCTCGA GCTCGTGCAG
GACGACCTGC GTGCGTGCGC GCGCCTCGAG GACCCGAGCG TCCCCACGCG TGACGGAGGC
GGCCGCGCCC TCCCGGGCGG CGGAGGTGGT GGTGCCACCC GGCACGCCCT CGTCCGTGAC
CTGGCCCGGT TGACCACCGC CCGCGGCTGT GTCGGCGAGG CGCGCGGCCA CTTCCTCGCG
GCAGCCCGCC TCGCTCCCTC GGGGGCGGCG GCAGCGCGGG ACCTGGCGGA CGCCGCGAGC
TGCGCCCACC TGCTCACCCA CGCGAAGGAC GCCTACGACC TGCTGCTCGA GGCGGCGCAG
GTGGCCGGCG CGGACGGCGG CGTCAGGGCC GACGCGCTCG CGGGCGCGGT CGTCGTGGCG
CGGCGCTTCC TCGGCTCCGG TTTCGAGCGG CCGGTGGAGC GGCCGGTGCT GGAGGGGATG
TTCGCGGAGG CGGATCGGAT CGCTGCAGGG GACGACGACG GCGCGTCGCG GCGGGTCGCA
CCAGTGGCGG TCGCGCGCGC CTGGTTGTCG GGCGACGGCG CGCAGCTGGT CGACGCCGGG
GCGGCCGCGC ACGCCGTGGC GCAGGTTCGC GAGACGGGAG ACGTCGTGCT GCTCAGCGCG
GCGCTGGACG CCAGCAGCAC CGCGTGGGCG GCGTCCGGCC GGCCGGACGA GTCCCACCGG
CTCGCGGGTG AGCGTCTGGA CCTCGTCGCG CTCATGGACC GGAGCGATCC GGGAGCGCTC
GTCGAGATCG TGGACGCCCA CCGGGGGGCC TCGGCCTACG CGATCGCGAC GGGCGCCGTC
GCCGAGGCGC TCGAGATCGG CGAACGTGCA GCCGCGGAGA CCTCCCTGGC GGCCTATCAC
CGGCGGAGCC TCGACTGGCT GGTCGTCGCC GCCGCGCTCG CCGGGGATCA CGCGCGCGCC
GTCGACCTGG CCGAGCGTTC CTGGAGCGCG TTCCTGGACG CCGGGCGGCC TCGCACGAGC
ACGTTCGGCG TACCGATGCT GGCGGGCTCG CTCGCGGCCG GACTGGCGGG AGACTCCGGC
GGGGCCGACC GGTGGCGCGA GCGCGCACGC GAGGGCACCG GCCTTGCCGA CTTTCACGCC
TCGCCCAACC TCGCGCCCTG GGACGCGTTC GTCAGAGCTC GGCTGGCGCT GCACACCGGT
GAGCTCGACG GCGTGCTCGC GTCCGTCGGT GCGGAATTCT CCCCGGGACG CTTCGACGGG
TACGCCGCCG CGGTCGCGGC CGAGATCGCC GTCGTCGCCG GATCACCGAA CGTCGAGGAC
CGGCTCGAGA CCGCCGCTCG CCACGCGGGC AGGAACCGGT GGGTGGCGGC ATCGCTGCAG
CGGAGCCGGG CTCGCCTCAC CGGCGACACC GACGCGCTGC ACGACGCGGC CGAGCTGTTC
GGGAACCTGG GCGCAGCGTT CGAGCGGGAA CGCACGCTCG CTCTCGTCGG CACCTGA
|
|---|
| Protein sequence | MPTLPAEAVT PREHDVLVGV AQHLTNAQIA RDLHLSVRTV ETHVSALLRK LGVASRRDLA
ATAAGLTARP DGSARPADHD GPRRVPGPHR HSLRSAGTPS GVIGLPAPRT SFVGRRAEVD
AATRLAQESR LTTIVGPGGA GKTRLAIAAT TAVAPAFPSG GAYVDLVPTR PGHVDEAVAT
ALGVTEGPGQ TLRQALAAAL RGRVLLVLDN AEHLVDDVTG LVEDLLDACP GLSIVATSRE
RLAVAGETVL LLGPLHVADE AVVLFTERAR DGDPAFAAEP ADVEDLCRRL DCSPLAIELA
AARVASLGVA GLRAGLADQL RVVAASRGGH ERHRSLRAVI EWSHRLLAAD ERYVLARTSL
FAGSFTLSSA AALCPDLAPG TVADVVGRLG DKSLVHRAED AARWTLLASV RQFAREQLDA
SDDAGRTVGL YRTWAASTAA DLRRRMASGA DWWDALELVQ DDLRACARLE DPSVPTRDGG
GRALPGGGGG GATRHALVRD LARLTTARGC VGEARGHFLA AARLAPSGAA AARDLADAAS
CAHLLTHAKD AYDLLLEAAQ VAGADGGVRA DALAGAVVVA RRFLGSGFER PVERPVLEGM
FAEADRIAAG DDDGASRRVA PVAVARAWLS GDGAQLVDAG AAAHAVAQVR ETGDVVLLSA
ALDASSTAWA ASGRPDESHR LAGERLDLVA LMDRSDPGAL VEIVDAHRGA SAYAIATGAV
AEALEIGERA AAETSLAAYH RRSLDWLVVA AALAGDHARA VDLAERSWSA FLDAGRPRTS
TFGVPMLAGS LAAGLAGDSG GADRWRERAR EGTGLADFHA SPNLAPWDAF VRARLALHTG
ELDGVLASVG AEFSPGRFDG YAAAVAAEIA VVAGSPNVED RLETAARHAG RNRWVAASLQ
RSRARLTGDT DALHDAAELF GNLGAAFERE RTLALVGT
|
|---|
| |