Gene Bcav_0276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcav_0276 
Symbol 
ID7858583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBeutenbergia cavernae DSM 12333 
KingdomBacteria 
Replicon accessionNC_012669 
Strand
Start bp299449 
End bp300768 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content72% 
IMG OID643864353 
Productextracellular solute-binding protein family 1 
Protein accessionYP_002880303 
Protein GI229818777 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00588273 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000015311 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGACGCA CCACCCCAGC GGTCGGCGCC CTCGCCGCAG CCGTCATGCT CGTCACCGCC 
GCCTGCTCCT CCGGAGGATC GTCCGGTGGG GACGGGGGAG ACGACGCCGC CTGGGCGCTC
CCGGACGAGG ACCCCACGGC CACCGTCCAG GTGCTCGGCC ACCAGGACGC CGCCGACCTG
CAGCCCGTGT TCGACGCGTT CAGCGAGGCC CACCCGAGCA TCACCGTCGA GTACGAGGCC
GTCCCGTTCG ACCAGCTCAA CTCCGTGCTC GACGCCCGGA TCGCGAACAA GGACGGCAAC
CCGGACGTGT ACTGGGCCGA CCAGCCGCGC ATCCCGGCGC TCTCGGCCCG GGGCTACGCC
GAGGACATCA CGGAGCAGTT CGCGCCGGAC GCCGAGGCCT GGGACCCAGC GCCGCTCGAG
TCGAGCTCGT TCGACGGCCA TCAGTGGGCG GTCCCGATCG CGAACTCGAC CCAGCTCCTC
TACTACAACA AGGACCTGCT CGACGCCGCC GGGGCGGAGT ACCCCTCGGC CGCCGTGGAG
GACCGCATGA CGTGGGAGGA GATCACCGAG CGCGCCGGCG CGGCGGTCGA CGCCGGCGCC
CAGAACGGGC TGCTGTTCGG CCAGGTGAAC AGGTACTACC AGCTGCAGCC GCTCCCGATG
TCGCTCGGCG GCTCGGCCGG CGGGACGGGC GAGGGGAACC TGACGCCGGA CGTCACGTCG
GACGCCTGGG TCGAGGCCAT GACCTGGTAC GGGTCGCTCT TCGCTGACGG CCTGTCGCCG
CAGGGTGTCG CGCCCGAGCA GTCGGACGCC GAGTTCCTCA CCGGGAACAC CGCCTACATG
GTGCAGGGCC CGTGGCTGCT GCCGCAGCTG ACCGAGGCCG ACTTCGAGTG GGGCGTCGCC
GCGCACCCGT ACTTCGAGGG CGGCGACGCC GTGACGCCGA CCGGATCGTG GTCGCTCGCG
ATGAGCCCGT TCAGCGACGA CAAGGAGGCG GCCGCCGTCT TCATGCGCTG GATGTCGGTC
GAGGAGGGCG GCGGCTACGC GGCCTACTAC GCCTCGCCGG AGCTTCCCGC GAACGTCGAG
GGCAAGACGC AGTACTTCGA GCGCGAGGTC TTCGCGTCGC CGTCCGGCCA GGACGCCGTG
TCGATCATCG ACGCCGAGAC GTCGACGACG GCGGTGCCGC GGCTGCAGAC GGTCGGGTAC
GTGGAGTTCG AGGAGATCCT CGGGCGCGCG TTCTCCGACG TCGCGAACGG TGCGGATCCC
GCAGGGGCGC TCGCGTCGGC GAGCTCCGAG CTCGAGACGG CGTGGGCGCA GTACCGGTGA
 
Protein sequence
MRRTTPAVGA LAAAVMLVTA ACSSGGSSGG DGGDDAAWAL PDEDPTATVQ VLGHQDAADL 
QPVFDAFSEA HPSITVEYEA VPFDQLNSVL DARIANKDGN PDVYWADQPR IPALSARGYA
EDITEQFAPD AEAWDPAPLE SSSFDGHQWA VPIANSTQLL YYNKDLLDAA GAEYPSAAVE
DRMTWEEITE RAGAAVDAGA QNGLLFGQVN RYYQLQPLPM SLGGSAGGTG EGNLTPDVTS
DAWVEAMTWY GSLFADGLSP QGVAPEQSDA EFLTGNTAYM VQGPWLLPQL TEADFEWGVA
AHPYFEGGDA VTPTGSWSLA MSPFSDDKEA AAVFMRWMSV EEGGGYAAYY ASPELPANVE
GKTQYFEREV FASPSGQDAV SIIDAETSTT AVPRLQTVGY VEFEEILGRA FSDVANGADP
AGALASASSE LETAWAQYR