| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcav_0272 |
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| Symbol | ligB |
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| ID | 7860066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Beutenbergia cavernae DSM 12333 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012669 |
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| Strand | - |
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| Start bp | 294279 |
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| End bp | 295817 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 643864349 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002880299 |
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| Protein GI | 229818773 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000560558 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000258657 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTCTCG CCGAGGTGGC CGCCACGTCC GACGCCGTCG CGGCCACCCG GTCGCGCCTC
GCCAAGCGCG CGGCGATCGC CGACCTGCTG CGGCGGGCGC CGGCGGACGA CGTCGAGATC
GTCGTCGCGT ACGTCGCCGG CGAGCTGCGG CAGCGGCGTA CCGGCCTCGG GTGGAGGTCG
TTGCGCGACC TCCCGGGCCC GGCGGAGGAT CCGAGCCTCG AGGTGGCCGA CGTCGACGCC
ACGTTCGCCG CGATGGCCGA CCTGGCCGGC CCGGGCTCGG CCACCGCCCG CGCCGCAGCC
GCTGCCGAGC TGTTCGCGGC GGCCACGGAA CGCGAGCAGG CGCTGCTGCG GGGGCTGGTC
TCCGGCGAGC TGCGGCAGGG TGCGCTCGAC GCCCTCGTGC TCGACGCCGT CGCCGACGCC
GCCGGTGTGC CGGCTCCCGA GGTGCGCCGT GCGGCGATGT TCGCCGGCGC GACCGGCCCG
GTCGCCCGCG CCGCTCTCGC CGCCGCCGGT CCGGCGGAGG CGGTCGCGGC GCTGTCCGGG
TTCATGCTCA CGGTGGGCCG CGCCGTCCGC CCGATGCTCG CACAGTCCGC ACCCGACGTC
GCCGCGGCGT TCGCGAAGCT CCCCGGGGGC GACGTCGCGG TGTCGGTCGA CGTCAAGCTC
GACGGCATCC GGATCCAGGT GCACAAGGCG GGCGACGAGG TCCGCGTGTT CACCCGCAGC
CTCGACGACA TCACCGGCCG CGTCCCGGAG ATCGTCGAGG CCGTCCGTGC GCTCCCGGCC
GGCGCGCTCG TGCTCGACGG CGAAGCGCTC GCGGTCGACG CCGGCGGCCG GCCGCGACCG
TTCCAGGAGA CGGCGTCGCG GTCCGCCACC CGTGACGCCG ACGTCGCGGC AGCCATGACC
CTCACGCCGT TCTTCTTCGA CTGCCTGCAC GCCGACGGCC GGGATCTCGT CGACGCTCCG
CTCCGCGAGC GGCTCGAGGT GCTCGACGCC GTCGCCGGTC CCCACGTCGT GACCCGACTG
ACGACGTCGG ACCCGGCGGC CGCCGAGGAG TTCTTCGCGG CGGCGGTCCG CGACGGGCAG
GAGGGCGTGG TGGTCAAGGC CACGGACACG CCCTACGAGG CGGGCCGGCG CGGCGCCGGC
TGGATCAAGG TGAAGCCACG GCACACGCTC GACCTGGTGG TGCTCGCCGT CGAGTGGGGA
TCGGGTCGGC GGCGCGGGTG GCTCTCGAAC ATCCACCTCG GTGCGCGCGA TCCTGCCGGC
GGGTTCGTCA TGCTCGGCAA GACGTTCAAG GGCATGACGG ACGAGATGCT GGCGTGGCAG
ACGGAGCGGT TCCTCGAGCT CGAGACGTCG CGCGACGAGT GGGCGGTCCA CCTGCGCCCC
GAGCAGGTGG TCGAGATCGC GTTCGACGGG CTCCAGCGCT CCACGCGGTA CCCCGGCGGT
CTCGCGCTCC GGTTCGCGCG GGTGCTGCGG TACCGCGACG ACAAGACGGC GGCCGAGGCC
GACACCATCG ACACTGTGCG CACCCTCGCC GGGCTCTGA
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| Protein sequence | MLLAEVAATS DAVAATRSRL AKRAAIADLL RRAPADDVEI VVAYVAGELR QRRTGLGWRS
LRDLPGPAED PSLEVADVDA TFAAMADLAG PGSATARAAA AAELFAAATE REQALLRGLV
SGELRQGALD ALVLDAVADA AGVPAPEVRR AAMFAGATGP VARAALAAAG PAEAVAALSG
FMLTVGRAVR PMLAQSAPDV AAAFAKLPGG DVAVSVDVKL DGIRIQVHKA GDEVRVFTRS
LDDITGRVPE IVEAVRALPA GALVLDGEAL AVDAGGRPRP FQETASRSAT RDADVAAAMT
LTPFFFDCLH ADGRDLVDAP LRERLEVLDA VAGPHVVTRL TTSDPAAAEE FFAAAVRDGQ
EGVVVKATDT PYEAGRRGAG WIKVKPRHTL DLVVLAVEWG SGRRRGWLSN IHLGARDPAG
GFVMLGKTFK GMTDEMLAWQ TERFLELETS RDEWAVHLRP EQVVEIAFDG LQRSTRYPGG
LALRFARVLR YRDDKTAAEA DTIDTVRTLA GL
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