Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_50960 |
Symbol | rnfC1 |
ID | 7763944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | - |
Start bp | 5165499 |
End bp | 5166989 |
Gene Length | 1491 bp |
Protein Length | 496 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643807924 |
Product | Electron transport complex, RnfABCDGE type, C subunit |
Protein accession | YP_002802158 |
Protein GI | 226947085 |
COG category | [C] Energy production and conversion |
COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.228247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTACTTCA ATCTTTCCAG TATCCGTGGC GGCGTCCATC CGGCCGCCCA CAAGGATCTC TCGGCCGCGC TGCCGATCGG CAGCCTGCCG CTGCCCCCGC GTCTCTATCT GCCGCTGCGC CAGCACGCCG GGGCTGAAGC CCTGCCGATG GTCGCGGTCG GCGACAAGGT GCTCAAGGGT CAGTTGCTGG CCTTCCCGCC GACGGAGGTT TCCGCGCCGG TGCACGCTCC CACTTCGGGG CGCATCGTCG CCATCGGACC GGTCCCGGCG CCGCATCCGT CGGGTCTGAC CACCACCGGC ATCGTCCTGG AGAGCGACGG CGAGGACCGT TGGATCGATC TGGATGTGTC CACCGATCCG TTCGCCGAGG ACCCGCTGGT GCTCGCCGAC CGCGTCGCCA AGGCCGGCAT CGTCGGCCTC GGCGGGGCGA TCTTCCCGGC GGCGGTCAAG CTCAAGCAGG GCACCCGCCA CGAGATCAAG ACCGTGCTGG TCAACGGCAG CGAGTGCGAG CCCTACCTGA CCTGCGACGA CCGCATCATG CGCGAGCGCG CCGAGGCCAT CGTCGACGGC GCCCGGCTGA TCCAGCACAT CCTGCGTGCC TACAGCGTGG TCATCGCCAT CGAGGACAAC AAGCCCGAGG CCCTGGCCGC CATGCGCGCC GCCGCCGAGC ACTTCGGCGC CATCGAAGTG ATGGCGGTGC CGGCGCTCTA TCCCATGGGT TCGGCCAAGC AACTGATCCA GGCGGTCACC GGCCGCGAGG TACCGGCCGG CGGTCGCAGC ACCGATGTCG GCGTGCTGGT GCACAACGCC GGCACCGTGT ACGCCATCCA GCAGGCCCTG CGCTTCGGCC GGCCGCTGAT CTCGCGGGTG GTCACGGTGT CCGGCGCCTG CGTGAAGACC CCGCAGAACC TCGACGTGCT GATCGGCACC CCGGTGCAGG CGCTCATCGA CGCCTGCGGC GGTCTGAGCG GCGATCCCCA GCAACTGCTG CTCGGCGGGC CGATGATGGG CGCGGTGCTG CCCTCCACCG AGGTGCCGGT GATCAAGGGC GCCACCGGCC TGCTGGCGCT GGCCCGGCAC GAACTGCCGA ACAAGGACCC GGCGCCCTGC ATTCGCTGCG CGAGCTGCGT GGATGCCTGC CCGATGGGCC TGACCCCGCT GGACATGGCC CTGTACGCCC GCGCCGACGA CTACGACGGC GCCAGCGAAT ACGGCCTGCG CGACTGCATC CTCTGCGGCT GCTGCTCCTA TGTCTGTCCC TCGCACATTC CGCTGGTGCA CTACTTCCAG TACGCCAAGG GTCAGCAGGA CGAGCGCCGC AGCGCCGCCC GCAAGAGCGA CTACATCAAG CGCCAGACCG AGGTCCGTGC CGCGCGTCTG GCGGAAGAAG AGGCCGCCAA GGCAGCCGCC AAGGCGGCCA AGGAGGCGGC CAAGGCCGCC AAGGCAGCGA AGACCAAGGC CGCCAAGCCG AGCAATGAGG TAGAGTCATG A
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Protein sequence | MYFNLSSIRG GVHPAAHKDL SAALPIGSLP LPPRLYLPLR QHAGAEALPM VAVGDKVLKG QLLAFPPTEV SAPVHAPTSG RIVAIGPVPA PHPSGLTTTG IVLESDGEDR WIDLDVSTDP FAEDPLVLAD RVAKAGIVGL GGAIFPAAVK LKQGTRHEIK TVLVNGSECE PYLTCDDRIM RERAEAIVDG ARLIQHILRA YSVVIAIEDN KPEALAAMRA AAEHFGAIEV MAVPALYPMG SAKQLIQAVT GREVPAGGRS TDVGVLVHNA GTVYAIQQAL RFGRPLISRV VTVSGACVKT PQNLDVLIGT PVQALIDACG GLSGDPQQLL LGGPMMGAVL PSTEVPVIKG ATGLLALARH ELPNKDPAPC IRCASCVDAC PMGLTPLDMA LYARADDYDG ASEYGLRDCI LCGCCSYVCP SHIPLVHYFQ YAKGQQDERR SAARKSDYIK RQTEVRAARL AEEEAAKAAA KAAKEAAKAA KAAKTKAAKP SNEVES
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