Gene Avin_50960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_50960 
SymbolrnfC1 
ID7763944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand
Start bp5165499 
End bp5166989 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content70% 
IMG OID643807924 
ProductElectron transport complex, RnfABCDGE type, C subunit 
Protein accessionYP_002802158 
Protein GI226947085 
COG category[C] Energy production and conversion 
COG ID[COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 
TIGRFAM ID[TIGR01945] electron transport complex, RnfABCDGE type, C subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.228247 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACTTCA ATCTTTCCAG TATCCGTGGC GGCGTCCATC CGGCCGCCCA CAAGGATCTC 
TCGGCCGCGC TGCCGATCGG CAGCCTGCCG CTGCCCCCGC GTCTCTATCT GCCGCTGCGC
CAGCACGCCG GGGCTGAAGC CCTGCCGATG GTCGCGGTCG GCGACAAGGT GCTCAAGGGT
CAGTTGCTGG CCTTCCCGCC GACGGAGGTT TCCGCGCCGG TGCACGCTCC CACTTCGGGG
CGCATCGTCG CCATCGGACC GGTCCCGGCG CCGCATCCGT CGGGTCTGAC CACCACCGGC
ATCGTCCTGG AGAGCGACGG CGAGGACCGT TGGATCGATC TGGATGTGTC CACCGATCCG
TTCGCCGAGG ACCCGCTGGT GCTCGCCGAC CGCGTCGCCA AGGCCGGCAT CGTCGGCCTC
GGCGGGGCGA TCTTCCCGGC GGCGGTCAAG CTCAAGCAGG GCACCCGCCA CGAGATCAAG
ACCGTGCTGG TCAACGGCAG CGAGTGCGAG CCCTACCTGA CCTGCGACGA CCGCATCATG
CGCGAGCGCG CCGAGGCCAT CGTCGACGGC GCCCGGCTGA TCCAGCACAT CCTGCGTGCC
TACAGCGTGG TCATCGCCAT CGAGGACAAC AAGCCCGAGG CCCTGGCCGC CATGCGCGCC
GCCGCCGAGC ACTTCGGCGC CATCGAAGTG ATGGCGGTGC CGGCGCTCTA TCCCATGGGT
TCGGCCAAGC AACTGATCCA GGCGGTCACC GGCCGCGAGG TACCGGCCGG CGGTCGCAGC
ACCGATGTCG GCGTGCTGGT GCACAACGCC GGCACCGTGT ACGCCATCCA GCAGGCCCTG
CGCTTCGGCC GGCCGCTGAT CTCGCGGGTG GTCACGGTGT CCGGCGCCTG CGTGAAGACC
CCGCAGAACC TCGACGTGCT GATCGGCACC CCGGTGCAGG CGCTCATCGA CGCCTGCGGC
GGTCTGAGCG GCGATCCCCA GCAACTGCTG CTCGGCGGGC CGATGATGGG CGCGGTGCTG
CCCTCCACCG AGGTGCCGGT GATCAAGGGC GCCACCGGCC TGCTGGCGCT GGCCCGGCAC
GAACTGCCGA ACAAGGACCC GGCGCCCTGC ATTCGCTGCG CGAGCTGCGT GGATGCCTGC
CCGATGGGCC TGACCCCGCT GGACATGGCC CTGTACGCCC GCGCCGACGA CTACGACGGC
GCCAGCGAAT ACGGCCTGCG CGACTGCATC CTCTGCGGCT GCTGCTCCTA TGTCTGTCCC
TCGCACATTC CGCTGGTGCA CTACTTCCAG TACGCCAAGG GTCAGCAGGA CGAGCGCCGC
AGCGCCGCCC GCAAGAGCGA CTACATCAAG CGCCAGACCG AGGTCCGTGC CGCGCGTCTG
GCGGAAGAAG AGGCCGCCAA GGCAGCCGCC AAGGCGGCCA AGGAGGCGGC CAAGGCCGCC
AAGGCAGCGA AGACCAAGGC CGCCAAGCCG AGCAATGAGG TAGAGTCATG A
 
Protein sequence
MYFNLSSIRG GVHPAAHKDL SAALPIGSLP LPPRLYLPLR QHAGAEALPM VAVGDKVLKG 
QLLAFPPTEV SAPVHAPTSG RIVAIGPVPA PHPSGLTTTG IVLESDGEDR WIDLDVSTDP
FAEDPLVLAD RVAKAGIVGL GGAIFPAAVK LKQGTRHEIK TVLVNGSECE PYLTCDDRIM
RERAEAIVDG ARLIQHILRA YSVVIAIEDN KPEALAAMRA AAEHFGAIEV MAVPALYPMG
SAKQLIQAVT GREVPAGGRS TDVGVLVHNA GTVYAIQQAL RFGRPLISRV VTVSGACVKT
PQNLDVLIGT PVQALIDACG GLSGDPQQLL LGGPMMGAVL PSTEVPVIKG ATGLLALARH
ELPNKDPAPC IRCASCVDAC PMGLTPLDMA LYARADDYDG ASEYGLRDCI LCGCCSYVCP
SHIPLVHYFQ YAKGQQDERR SAARKSDYIK RQTEVRAARL AEEEAAKAAA KAAKEAAKAA
KAAKTKAAKP SNEVES