| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_49140 |
|---|
| Symbol | |
|---|
| ID | 7763772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 4973310 |
|---|
| End bp | 4975379 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643807753 |
|---|
| Product | GGDEF domain protein |
|---|
| Protein accession | YP_002801988 |
|---|
| Protein GI | 226946915 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCCA GCCGCTACAA CGAAGTTCTC GTCGTTTTCT CCCTGATCGT CGCCATCCTC
GCCTCCTACA CCGCCCTCGA CATCGCCGGC CGGGTTTCCA CGGCCCAGCG GGGCGCGCGG
CTCGCCTGGC TGGCCGGCGG GGCGCTGGCC ATGGGAACGG GTATCTGGTC CATGCACTTC
GTCGGCATGC TGGCGTTCAG CCTGCCGATC GAGCTCGGCT ACGACCTGTG GCTGACCAGC
GCTTCCCTGC TGATCGCCAT CGCCTCGTCG ACCTTCGCCC TCTGGCTGGT CTGCCAGCGG
GAACTACCCT GGCCGCGGCT GGCGATGGGC GCCTCGCTGA TGGGAGCCGG CATCGCCGCC
ATGCACTACA CCGGCATGGA GGCCATGCGC ATGGTGCCGG GCATCGTCTA CGACCCGGCC
TGGTTCGCCC TGTCGATCGT CGTCGCCGTG CTGGCCTCGG GCGCGGCGCT GTGGATCGCC
TTCCGCCTGC GCTGGCATTC CACCTGGGTG GTCTTCAGTC GGGCCGGCGC ATCGGTGGCG
ATGGGCTGCG CCATCGTCGG CATGCACTAC ACCGGCATGG CCGCCTCGCA GTTCCCGGAG
GGCAGCTACT GCGGGGCGGC CAACAGCGGC ATCGACACCG GCTGGCTGTC GATCCTGGTG
ATCATGGCGG CGCTCAGCGT GATGGCCACC ACACTGATCA TCTCGGTGCT GGACTCGCGC
CTGGAACAGC GCACCGCGTC GCTGGCCAGC GCGCTCAGCA AGGCCAACAG CGAGCTGATG
CAACTGGCGC TATACGACAA CCTGACCAAG TTGCCCAACC GCATGCTGCT CGCCGACCGC
CTGGGTCAGG CGATCGAAAA GGCCCGCCGC GAACACAAGG TGTTCGCCGT ACTGTTCATC
GACCTGGACG GCTTCAAGGC GATCAACGAC GCCTACGGCC ATCACCTCGG CGACCTGCTG
CTGGTGGAGG TGACGCAGCG CATTCGCGGT AGCGTGCGCG GCCAGGACAC CATCGCCCGG
CTGGGCGGCG ACGAACTCAT CCTGTTGACG GAAATCGGCG AACCGACGGA CGCGGCGAAG
ATCGCCGGAA AACTGATCGA AACCATCCGC CAGCCCTATT CGATCGAGCA TCACGAACTA
TTCGTCTCCG CCAGCGTCGG CATCGCCGTC TACCCCGACG ACGGGCTGGC CCCGCACGAA
CTGCTGGTCA ACGCCGACGC GGCGATGTAC CACGCCAAGG AACAGGGCCG CGACGGCTAC
TGCTTCTTCG AGAACTCGAT GAACGCCAAC GCCCAGGAGC AGTTGCGTCT GCTGCAGGAC
CTGCGCCACG CCCTGGAACG CGACGAGCTG CGCCTGCACT ACCAGCCCAA GCTGATCGCC
CCAGACGGGC CGATCATCGG GGTCGAGGCA CTGCTGCGCT GGCAGCATCC CGAACGCGGC
CTGCTGTCGC CCGACCAATT CCTGCCGCTG GCGGAGAAAA CCGGCCTGAT CGTGCCGATC
GGCAACTGGG TGCTCGACGA AGCCTGCGCG CAGATACAGC GCTGGCGCGC GGCGGGCCAT
ACGAGCTGGA ACATCGCGGT GAACCTGTCG GCCAGCCAGT TCGCCCATGC CAAGCTGATC
GACTCGGTGC GCACAGCCCT GCAGCGACAT GGCCTGGAAG CGCACAACCT GACCCTCGAA
ATCACTGAAT CCACCGCCAT GCGCGATGCC GACTCCAGCC TGGCGGTACT CGAACAACTG
GCGGCGATGG GGGTTGGCAT CTCCATCGAC GATTTCGGCA CCGGCTACTC CAGCCTGCTC
TACCTCAAGC GCCTGCCGGC CAACGAGCTG AAGATCGACC GCGGCTTCGT CAACGAACTG
GGCCAGGGCG GCGACGACGC GGCCATCGTC TCCGCGATCA TCGCTCTGGG CCGGACGCTG
GGCCTGAAGA TCGTCGCCGA GGGCGTGGAA ACCCCCGAGC AGCAGAAACA CCTCACCCGG
CTCGGCTGCA ACCTGCTGCA AGGCTATCTG CTCGGGCGGC CGATGCCGGC CGAACAGTTG
ATCGAGTGCT ACGGAGAAAC GCCGGCGTAG
|
|---|
| Protein sequence | MLASRYNEVL VVFSLIVAIL ASYTALDIAG RVSTAQRGAR LAWLAGGALA MGTGIWSMHF
VGMLAFSLPI ELGYDLWLTS ASLLIAIASS TFALWLVCQR ELPWPRLAMG ASLMGAGIAA
MHYTGMEAMR MVPGIVYDPA WFALSIVVAV LASGAALWIA FRLRWHSTWV VFSRAGASVA
MGCAIVGMHY TGMAASQFPE GSYCGAANSG IDTGWLSILV IMAALSVMAT TLIISVLDSR
LEQRTASLAS ALSKANSELM QLALYDNLTK LPNRMLLADR LGQAIEKARR EHKVFAVLFI
DLDGFKAIND AYGHHLGDLL LVEVTQRIRG SVRGQDTIAR LGGDELILLT EIGEPTDAAK
IAGKLIETIR QPYSIEHHEL FVSASVGIAV YPDDGLAPHE LLVNADAAMY HAKEQGRDGY
CFFENSMNAN AQEQLRLLQD LRHALERDEL RLHYQPKLIA PDGPIIGVEA LLRWQHPERG
LLSPDQFLPL AEKTGLIVPI GNWVLDEACA QIQRWRAAGH TSWNIAVNLS ASQFAHAKLI
DSVRTALQRH GLEAHNLTLE ITESTAMRDA DSSLAVLEQL AAMGVGISID DFGTGYSSLL
YLKRLPANEL KIDRGFVNEL GQGGDDAAIV SAIIALGRTL GLKIVAEGVE TPEQQKHLTR
LGCNLLQGYL LGRPMPAEQL IECYGETPA
|
|---|
| |