Gene Avin_49060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_49060 
Symbol 
ID7763764 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand
Start bp4965547 
End bp4967208 
Gene Length1662 bp 
Protein Length553 aa 
Translation table11 
GC content68% 
IMG OID643807745 
Productcyclic di-GMP signal transduction protein 
Protein accessionYP_002801980 
Protein GI226946907 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.60353 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTTCGACA GCACCCTGGA GGGCGTGCTG GTCACCGATG CGAACCAGCG CATCGTCCAC 
ATCAACCGGG CCTTCACGCG GATCACCGGC TACACCGAAG CCGAGGTGCT CGGGCGAGCG
CCCTCGCTCC TCAAGTCCGG TCGGCATGAC GAGGAGTTCT ACCGGAAGAT GTGGCAGGCG
CTGGGCCAAC GTCTCGAATG GAACGGCGAG ATCTGGAACC GCCGCAAGAG CGGCGAGGTG
TATCCGCAGT GGCAGAGCAT CCGCGCCATC CGCAACGAAG AAGGCGGCAT CAGCCACTAC
GTGGCGGTGT TCTCCGACCT GTCGATGATC AAGCGCTCCC AGGCCGAACT CGACTACCTG
GCCCATTACG ACCCGCTGAC CGGCCTGCCG AACCGGCTGC TGTTCAAGGA GCGCGTCCAG
CACGCCCTGG AACGGGCCCG CCTGGAGAAG GGCCAGGGCG CGGTCCTGCT GCTCGACCTC
GACCACTTCA AGCACGTCAA CGAAAGCCTC GGCCACAAGC TGGGCGACCA ACTGCTCAAG
AGCGTCAGCC AGCAACTGAT CTACCACGTG GTGCGCCAGG GCATGACCTT CGCCCACCTG
GGCGGCGACG AATTCGGCCT GCTCTGCGAG AACTGCTCGC CGCAGCAGGC CGCCACCCTG
GCCACCACCC TCCTCGACAC GCTGAACCAG CCCATCTACC TGGAGCACCA CCGGCTGCTG
ATCGGTGCCA GCCTCGGCAT CAGCCTGTTC CCCGGCGATG CGCAGAGCGT CGAGCAGGTG
CTGCGCAACG CCGATTCCGC CCTGCACAAG GCCAAGAGCG ACGGGCGCGC CACCTACGCC
TTCTACAGCC AGGAGTTGAC CGCCTACGCG CACCAGCGCG TCGAACTGAT CGCCGCCCTG
CGCCATGCCC TGGAGCACGG CGAACTGCGC GTCCACTACC AGCCGATCCA CGACCTTCGC
AGCGGGCAAC TGGTCAGCCT CGAAGCGCTG GTGCGCTGGC AGCATCCCGA GCGCGGCCTG
GTGCCGCCCG GCGAGTTCAT CCCGGTCGCC GAGGAAAACG GTCTGATCGG CACCATCGAC
CTCTGGGTGA TGGAGCAGGC CTGCCGGCAG ATGCGCAGAT GGCTGAAGGC CGGGCACAAG
CTCCAGTTCG TCGCGGTGAA CGTCTCCACC CGCCTGTTCA GCCGTGGCCG GCTGGACCTG
CAGGTCGCCG AGATCCTCGC CTGCAGCGGC CTGGAGGCGC GTCACCTGGA GCTGGAGATC
ACCGAGAGCG CGGTGATGGA CGACCCGGAC AGCGCCCGTC GCCAGCTCCA GCGGCTGCGC
GATCTGGGCG TGCGCCTGGC GATCGACGAC TTCGGCACCG GCCATTCCTC GCTGCAGCGC
CTGAAAAGCA TGCCGGTGGA CAAGCTGAAG ATCGACCGCG GCTTCGTCGC CGGCCTGCCA
TCCGACAGCA AGGACGCCGC CATTGCCCGC TCGGTGATAG TGCTCGCCCA GAGCCTGGGT
CTGAGCGTGC TGGCCGAAGG CATCGAGCGG CCGGAGCAGG CGGAGTTCCT CGAACGCAAC
CAGTGCTTCC TGGGCCAGGG CTATCTCTTC GGCCGGCCGC AACCGGCGGA GGAACTCTTC
CGGACGGCGG CCGCGCTGCC GGCGAAGGCC CTGGCCGGCT GA
 
Protein sequence
MFDSTLEGVL VTDANQRIVH INRAFTRITG YTEAEVLGRA PSLLKSGRHD EEFYRKMWQA 
LGQRLEWNGE IWNRRKSGEV YPQWQSIRAI RNEEGGISHY VAVFSDLSMI KRSQAELDYL
AHYDPLTGLP NRLLFKERVQ HALERARLEK GQGAVLLLDL DHFKHVNESL GHKLGDQLLK
SVSQQLIYHV VRQGMTFAHL GGDEFGLLCE NCSPQQAATL ATTLLDTLNQ PIYLEHHRLL
IGASLGISLF PGDAQSVEQV LRNADSALHK AKSDGRATYA FYSQELTAYA HQRVELIAAL
RHALEHGELR VHYQPIHDLR SGQLVSLEAL VRWQHPERGL VPPGEFIPVA EENGLIGTID
LWVMEQACRQ MRRWLKAGHK LQFVAVNVST RLFSRGRLDL QVAEILACSG LEARHLELEI
TESAVMDDPD SARRQLQRLR DLGVRLAIDD FGTGHSSLQR LKSMPVDKLK IDRGFVAGLP
SDSKDAAIAR SVIVLAQSLG LSVLAEGIER PEQAEFLERN QCFLGQGYLF GRPQPAEELF
RTAAALPAKA LAG