Gene Avin_47860 details

Gene Information

• Locus tag: Avin_47860
• Symbol: rep
• ID: 7763648
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 4853491
• End bp: 4855500
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 643807630
• Product: ATP-dependent DNA helicase Rep protein
• Protein accession: YP_002801865
• Protein GI: 226946792
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases
• TIGRFAM ID: [TIGR01074] ATP-dependent DNA helicase Rep

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCGAC TCAATCCCCG CCAGCAGGAA GCCGTGACCT ATGTCGGCGG CCCGCTGCTG 
GTGCTCGCCG GCGCCGGCTC CGGCAAGACC AGCGTGATCA CCCGCAAGAT CGCCTATCTG 
ATTCAACACT GCGGCATCCA GGCCCGCCAC ATCGTCGCCA TGACCTTCAC CAACAAGGCC 
GCCCGCGAGA TGAAGGAGCG CGTCGGCAGC CTGCTGCGCG GCGCCGAGGG CAAGGGACTG 
ACCGTCTCCA CCTTCCACAA CCTCGGCCTC AACATCATCC GCAGGGAACA CGCGCGACTC 
GGCTACAAGC CCGGCTTCTC GATCTTCGAC GAGGGCGACA TCAAGACCCT GGTCGCCGAC 
ATCATGCAGA AGGAATACGC CGGCGACGAC GGCGCCGACC AGGTGATCCA GCAGATCGGC 
GCCTGGAAGA ACGACCTGAT CCTCCCCGAC GAGGCCCTGT CCCGCGCGCG CAATCCCCGC 
GAGCAGAACG CCGCCATCGT CTACCTGCAC TACCAGCGCA CCCTCAAGGC CTACAACGCG 
GTCGACTTCG ACGACCTGAT CCTGCTGCCG GTGAAACTCT TCGAGAGCCA GCCCGAGGTG 
CTGGAGAAAT GGCAACAGCG CATCCGCTAC CTGCTGGTCG ACGAATACCA GGACACCAAC 
GCCAGCCAGT ATTTGCTGGT GAAGCTCCTG GTCGGCATAC GCCACCAGTT CACCGTGGTC 
GGCGACGACG ACCAGTCGAT CTATGCCTGG CGCGGCGCCC GCCCGGAAAA CCTGATGCAG 
TTGAAGTCGG ACTACCCCTC GCTGAAGGTG GTGATGCTCG AACAGAACTA CCGCTCGACC 
AGCCGCATCC TGCGCTGCGC CAACGTGCTG ATCGCCAACA ATCCCCACGT GTTCGACAAG 
CAGTTGTGGA GCGAGATGGG CCACGGCGAC GAGATCCGCG TGATCCGCTG CCGCAACGAG 
GAGGCCGAGG CCGAGCGGGT GGCCATGGAG ATCCTCACCC TGCACCTGAA GACCGGCCGG 
CCCTACAGCG ACTTCGCCAT CCTCTACCGC GGCAACTACC AGTCGCGGCT GATGGAAATG 
AAACTGCAGC ACCACCAGAT TCCCTACCGC CTCTCCGGCG GCACCAGCTT CTTCGCCCGC 
CAGGAAGTGA AGGACCTGAT GAGCTACTTC CGCCTGCTGG TCAACCCGGA CGACGACAAC 
GCCTTCCTCC GGGTGATCAA CGTGCCGCGC CGCGAGATCG GCTCGGCGAC CCTGGAAAAG 
CTCGGCCAGC ATGCCGGCGA GCTCAACCTC TCGTTGTACG AGGCCGCCGG CGACCCGGCG 
CTGGCCGGCC ACCTGGACGG CCGCTACTGC GAGCGCCTGG CGCGCTTCGT CCGCTGGATG 
GATGGCGTGC GCCGGCAGTG CGCGCAGAAC GACCCGATCG CCGCCCTGCG CAGCATGGTG 
ATGGACATCG ACTACGAGAA CTGGCTCCGC CAGAACGCCT CCAGCGACAA GATCGCCGAT 
GTGCGCATGG GCAACGTCTG GTTCCTCGTC GAAGCACTGA AGAATACCCT CGAAAGGGAC 
GAAGACGGCG GGATGACCAT CGAGGAAGCC ATCGGCAAGC TGGTCCTGCG CGACATGCTC 
GAGCGCCAGC AGGAGGAAGA GGAAGGCGCC GAGGGCGTAC AGATGCTCAC CCTGCACGCC 
TCCAAGGGCC TGGAATTTCC CCATGTGTTC ATCATCGGCG TGGAGGAGGA AATCCTCCCC 
CACCGCTCCA GCATCGAGGC CGACACCATC GAGGAGGAGC GCCGCCTGGC CTACGTCGGC 
ATCACCCGCG CTCGGCAGAA TCTGGTGCTG ACCTTCGCCG CCAGGCGCAA GCAGTACGGC 
GAGATCATCG ACTGCGCGCC CAGCCGCTTC CTCGCCGAAC TGCCGCAGGA CGACCTGATC 
TGGGAAGGCC AGGAGGACGC GCCGGTGGAA GCCAAGGCAG CACGAGGCAA GAGCGCGCTG 
GCCGATATCC GGGCGATGCT CAAGCGCTGA 

 

Protein sequence

MSRLNPRQQE AVTYVGGPLL VLAGAGSGKT SVITRKIAYL IQHCGIQARH IVAMTFTNKA 
AREMKERVGS LLRGAEGKGL TVSTFHNLGL NIIRREHARL GYKPGFSIFD EGDIKTLVAD 
IMQKEYAGDD GADQVIQQIG AWKNDLILPD EALSRARNPR EQNAAIVYLH YQRTLKAYNA 
VDFDDLILLP VKLFESQPEV LEKWQQRIRY LLVDEYQDTN ASQYLLVKLL VGIRHQFTVV 
GDDDQSIYAW RGARPENLMQ LKSDYPSLKV VMLEQNYRST SRILRCANVL IANNPHVFDK 
QLWSEMGHGD EIRVIRCRNE EAEAERVAME ILTLHLKTGR PYSDFAILYR GNYQSRLMEM 
KLQHHQIPYR LSGGTSFFAR QEVKDLMSYF RLLVNPDDDN AFLRVINVPR REIGSATLEK 
LGQHAGELNL SLYEAAGDPA LAGHLDGRYC ERLARFVRWM DGVRRQCAQN DPIAALRSMV 
MDIDYENWLR QNASSDKIAD VRMGNVWFLV EALKNTLERD EDGGMTIEEA IGKLVLRDML 
ERQQEEEEGA EGVQMLTLHA SKGLEFPHVF IIGVEEEILP HRSSIEADTI EEERRLAYVG 
ITRARQNLVL TFAARRKQYG EIIDCAPSRF LAELPQDDLI WEGQEDAPVE AKAARGKSAL 
ADIRAMLKR