Gene Avin_47740 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_47740 
Symbol 
ID7763636 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand
Start bp4843480 
End bp4844181 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content70% 
IMG OID643807618 
Producthaloacid dehalogenase-like hydrolase protein 
Protein accessionYP_002801853 
Protein GI226946780 
COG category[R] General function prediction only 
COG ID[COG1011] Predicted hydrolase (HAD superfamily) 
TIGRFAM ID[TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.127906 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATCC GCCTGATCAC CTTCGACCTC GACGACACCC TGTGGAACCT CGCCCCGGTC 
ATCGAAAGCG CCGAAGCCGA ACTGCGCGAC TGGCTGGGCC GCCATGCGCC GCTGCTCGGC
GCGGTACCGG TCGAACACCT GCAGCCGATC CGCGCCCGCC TGGTCGAAGG CGACCCGTCG
CTCAAGCACC GCATCAGCGA ACTGCGCCGC CGCGTGCTTT CGCATGCCCT GGAAGAGGCC
GGCTATCCCG CGCCCGAAGC CCGCGAACTG GCCGGACTGG CCTTCGAGAC CTTCCTCGCC
GCGCGCCACC GCATCGAGTT CTTCCCCGAG ACGCGGCCGA CCCTGGCAAT CCTCGCCGAC
CGCTACCGCC TCGGCGTGCT GACCAACGGC AATGCCGATG TGCGCCGGCT GGGCCTGGCC
GACTATTTCC ACTTCATCCT CTGCGCCGAG GATCTGGGCA TCGGCAAGCC CGACCCGCAG
CCCTTCCATG AGGCCCTGCG GCGCGGCGGA GCGAGTGCCG AAGAAACGGT GCACATCGGC
GATCATCCCG ACGACGACAT CCAGGGCGCC CAGCGCGCCG GTCTGCGCGC GATCTGGTAT
AACCCCGGCG GCAAGCCCTG GAGCCACGCG GGAACACCGG ATGCGCAGAT CGCCAGCCTG
GCGGAGCTGC CGGCGCTGCT CGGCCGCTGG CAGGCCGGCT GA
 
Protein sequence
MSIRLITFDL DDTLWNLAPV IESAEAELRD WLGRHAPLLG AVPVEHLQPI RARLVEGDPS 
LKHRISELRR RVLSHALEEA GYPAPEAREL AGLAFETFLA ARHRIEFFPE TRPTLAILAD
RYRLGVLTNG NADVRRLGLA DYFHFILCAE DLGIGKPDPQ PFHEALRRGG ASAEETVHIG
DHPDDDIQGA QRAGLRAIWY NPGGKPWSHA GTPDAQIASL AELPALLGRW QAG