Gene Avin_47000 details

Gene Information

• Locus tag: Avin_47000
• Symbol: rpoD
• ID: 7763563
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 4770914
• End bp: 4772776
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643807544
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002801780
• Protein GI: 226946707
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGTAA AAGCTCAACA GCAGTCTCGC ATCAAAGAGT TGATCGCTCG CGGCCGCGAA 
CAGGGTTACC TGACCTATGC CGAGGTCAAC GACCACCTGC CCGAGGATAT TTCCGATCCG 
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAAAGT 
GCCCCGGATA CGGATGCCCT GTTGTTGGCC GAAGCCGACA CCGACGAAGC TGCCGCCGAG 
GAAGCCGCCG CGGCCCTGGC CGCCGTGGAA ACCGACATCG GTCGTACCAC CGACCCGGTG 
CGCATGTACA TGCGCGAAAT GGGTACCGTG GAACTGCTCA CCCGCGAAGG CGAAATCGAG 
ATCGCCAAGC GCATCGAGGA AGGCATCCGC GAGGTGATGA GCGCCATCGC CCACTTCCCG 
GGCACCGTGG ACGGCATCCT CGCGGAATAC CAGCGCGTCA CCAGCGAAGG CGGCCGCCTG 
TCCGACATCC TCAGCGGCTA CATCGATCCC GACGACGATT CGGCGGTGCC TGCCGAGGCC 
GAGGTTCCCG TCGATCTCAA GAGCAAGAGC GCCGCGACCC CCGCCGCATC CGAGGACGAG 
GACGAGGACG AGAGCGAGGA AAGCGACAGC GACGACGAGG AAGGCGACGG TGGTCCCGAC 
CCGGAGATCG CCCGCCAGCG CTTCGGCGCT GTCGCCGAGC AGTTGGGCAG GACCCGTGTG 
GCTCTCGAAC GGCACGGGCG CCACAGCGTC GAGGGCCTTG AGGCGCTGCA GGCGCTGGCC 
AGCCTGTTCA TGCCGATCAA GCTGGTGCCC AAACAGTACG ACACCCTGGT CGAGCAGGTG 
CGTGACGCCC TGACCCGCGT GCGCGCCCAG GAACGCGCGA TCATGCAGTT GTGCGTGCGC 
GATGCGCGCA TGCCGCGCGC CGACTTCCTG CGCCAGTTTC CCGGCAACGA GACCGATCAG 
GACTGGGTCG ACCTCCTCGC CAAGGGCAAG GCCAAGTACG CCGAAGCCCT GGGCAATCTG 
GCCGACGACA TCAAGCAGTG CCAGCAGAAG CTGATCGACC TCGAGCAGAA GGTCGGCCTG 
ACCATCGCCG AAATCAAGGA CATCAACCGC CAGATGTCCA TCGGCGAAGC CAAGGCCCGC 
CGCGCCAAGA AGGAAATGGT CGAGGCCAAC CTGCGCCTGG TGATCTCCAT CGCCAAGAAA 
TACACCAACC GCGGCCTGCA GTTCCTCGAT CTGATCCAGG AAGGCAACAT CGGCCTGATG 
AAGGCGGTGG ACAAGTTCGA ATACCGCCGC GGCTACAAGT TCTCGACCTA CGCCACCTGG 
TGGATCCGCC AGGCGATCAC CCGCTCGATC GCCGACCAGG CGCGCACCAT CCGCATCCCG 
GTGCACATGA TCGAGACCAT CAACAAGCTC AACCGCATCT CCCGCCAGAT GCTCCAGGAG 
ATGGGCCGCG AACCCACGCC GGAAGAACTC GGCGAGCGCA TGGACATGCC CGAGGACAAG 
ATCCGCAAGG TGCTGAAGAT CGCCAAGGAA CCGATCTCCA TGGAAACCCC GATCGGCGAC 
GACGAGGACT CGCATCTGGG CGACTTCATC GAGGACTCGA CCATGCAGTC GCCGATCGAG 
GTGGCGACCG TGGAAAGCCT CAAGGAGGCC ACCCGCGAAG TCCTCGCCGG CCTCACCGCC 
CGGGAAGCCA AGGTGCTGCG CATGCGCTTC GGCATCGACA TGAACACCGA CCACACCCTC 
GAGGAGGTCG GCAAGCAGTT CGACGTGACC CGCGAGCGCA TCCGTCAGAT CGAGGCCAAG 
GCCCTGCGCA AGCTGCGCCA CCCCTCGCGA AGCGAGCACC TGCGCTCCTT CCTTGACGAG 
TGA 

 

Protein sequence

MSVKAQQQSR IKELIARGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES 
APDTDALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE 
IAKRIEEGIR EVMSAIAHFP GTVDGILAEY QRVTSEGGRL SDILSGYIDP DDDSAVPAEA 
EVPVDLKSKS AATPAASEDE DEDESEESDS DDEEGDGGPD PEIARQRFGA VAEQLGRTRV 
ALERHGRHSV EGLEALQALA SLFMPIKLVP KQYDTLVEQV RDALTRVRAQ ERAIMQLCVR 
DARMPRADFL RQFPGNETDQ DWVDLLAKGK AKYAEALGNL ADDIKQCQQK LIDLEQKVGL 
TIAEIKDINR QMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM 
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE 
MGREPTPEEL GERMDMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDSTMQSPIE 
VATVESLKEA TREVLAGLTA REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK 
ALRKLRHPSR SEHLRSFLDE