| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_43960 |
|---|
| Symbol | |
|---|
| ID | 7763269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 4446152 |
|---|
| End bp | 4447219 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643807251 |
|---|
| Product | periplasmic substrate binding protein |
|---|
| Protein accession | YP_002801492 |
|---|
| Protein GI | 226946419 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.400414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGA TCGCAAACCT GCCCGGCAGA CTCCTGATCC TCCTCTCGCT GGCGCTGCTG
GCGGCCTGTG GCGCGGACCC CGAGCCGCCC CGCCCGTCCG CCGGCGAGGC GCCGGACCTG
TCCGGGGTGG TGCTGCGGGT CGGCGCGCCG AACAAGATCG GCAACCGTCC CTACCTGCAG
GTGGCCGGGC AACTGGAGAA CCTGCCCTAC CGCATCGAAT GGTCGGAATT CTCCGCCACT
CCGGCGCTCC TGGAGGCGCT GCGCGGCGGC AACATCGACA TCGGCGGCAA CGGCGGCTCC
ACCGGCATCC TCTTCGAGGT CGCCAACAAC ACCGACAGCG GCATCAAGGT GATCGCCGCC
GGACGCGCGG TCTCGACGGG CGCCGGCGCC GCCATCCTGG TGCGCGGCGA CTCGCCCTAC
AAAGGCATCG CCGACCTCGG GGGCACCCGC TTTTCCGTGG TCAAGGGCAC CGGCAGCCAG
TACCTGCTGG GCCAGGCGCT GAAAAAGGAA AACCTCGGCC TGGACGACCT GCAACTGCTC
CATTTGACCA ACGACGCCGC CCTGGCCGCC CTGCTCGCCG GACACATCGA CGCCTGGGCC
ACCTGGGACC CCCAGGCCAG CGTGCTGCAG TCGCACCCCG ACCTGCGCCT GCTGGGCTGG
ATCGGCAACC CGGACGACTC CTGGACCATC CAGTACGCCT CGCAACAAGC CCTCGACGAT
CCCGGCAAAC GCGCGGCGAT CGCCGACTTC CTGGGGCGCC TGGCCTATTC CACGGTCTGG
GTCGGCCGCC ATCCCGAGCA ATGGGCCGAG GTCAGCGGGC AACTGACCCG GATCGATCCG
GCCGTGATGC TCGGGATCGC CCGCAAGACG CGTACCGAAT ACGGCCTGGA CGGGGAACAG
CGGACGGCGC TGGAAGCCTC CTTCCGGCGC GAGGCCGATT TCTGGCGGAG CATCGACGTG
ATCGGCGCGG CCCCGGAGAT TCCCCGGCTG TTCGACCACC GCTTCAACGA ACGGATGCTC
GAAGCCACCC GCCGGGCCCG ACAGACACTC GGCGAAACCG CGCCGTGA
|
|---|
| Protein sequence | MSMIANLPGR LLILLSLALL AACGADPEPP RPSAGEAPDL SGVVLRVGAP NKIGNRPYLQ
VAGQLENLPY RIEWSEFSAT PALLEALRGG NIDIGGNGGS TGILFEVANN TDSGIKVIAA
GRAVSTGAGA AILVRGDSPY KGIADLGGTR FSVVKGTGSQ YLLGQALKKE NLGLDDLQLL
HLTNDAALAA LLAGHIDAWA TWDPQASVLQ SHPDLRLLGW IGNPDDSWTI QYASQQALDD
PGKRAAIADF LGRLAYSTVW VGRHPEQWAE VSGQLTRIDP AVMLGIARKT RTEYGLDGEQ
RTALEASFRR EADFWRSIDV IGAAPEIPRL FDHRFNERML EATRRARQTL GETAP
|
|---|
| |