Gene Avin_42900 details

Gene Information

• Locus tag: Avin_42900
• Symbol: rrmJ
• ID: 7763164
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4329107
• End bp: 4329730
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643807146
• Product: ribosomal RNA large subunit methyltransferase J/FtsJ
• Protein accession: YP_002801387
• Protein GI: 226946314
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0293] 23S rRNA methylase
• TIGRFAM ID: [TIGR00438] cell division protein FtsJ

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCACGAT CCAAGACTAG TCATCGCTGG TTGAAAGAGC ATTTCGATGA CCCCTACGTG 
AAGATGGCGC AAAAGGACGG CTACCGTTCG CGTGCCAGCT ATAAATTGCT GGAGATCCAG 
GAAAAGGACC GAATTCTGCG GCCGGGCATG ACCGTGGTCG ACCTGGGGGC TGCGCCGGGC 
GGCTGGTCGC AGGTGACCAG CCGGCTCATC GGCGATCGGG GGCGTCTGAT CGCTTCGGAC 
ATCCTGCCGA TGGACAGCAT TCCGGATGTG ACCTTCATCC AGGGGGACTT CACCGACGAT 
GCGGTGTTTG CCCTGCTTCT CGAGGCGATC GGCGAGCAGC CGGTCGACCT TGTGATTTCC 
GACATGGCCC CCAATATGAG CGGAGTGAAG GCGGCCGACC AGCCGCGGGC AATGTATCTC 
TGCGAGCTGG CGCTGGATTT GGCCGGGCGG GTTCTGCGTC CGGGCGGCGA TTTCCTGATC 
AAGATCTTCC AGGGCGAAGG TTTCGACCAG TATCTCCGGC AGGTGCGCGA AGGTTTCGAC 
AAGGTACAGA TGCGCAAGCC GCTCTCGTCT CGCGACCGCT CTCGCGAGCA ATATCTGCTC 
GCGCGCGGCT TTCGTGGAGC CTAG 

 

Protein sequence

MARSKTSHRW LKEHFDDPYV KMAQKDGYRS RASYKLLEIQ EKDRILRPGM TVVDLGAAPG 
GWSQVTSRLI GDRGRLIASD ILPMDSIPDV TFIQGDFTDD AVFALLLEAI GEQPVDLVIS 
DMAPNMSGVK AADQPRAMYL CELALDLAGR VLRPGGDFLI KIFQGEGFDQ YLRQVREGFD 
KVQMRKPLSS RDRSREQYLL ARGFRGA