Gene Avin_39550 details

Gene Information

• Locus tag: Avin_39550
• Symbol: rimM
• ID: 7762844
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 4003719
• End bp: 4004255
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643806817
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_002801069
• Protein GI: 226945996
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.383367
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGACATGA CGCCTGCATC CGCCGATGGG CTGATCGTTC TCGGCAAGAT CACTTCGGTG 
CATGGCGTCC GCGGGGAAGT GAAGGTCTAT TCCTTCACCG ATCCGATCGA CAATCTGCTG 
GATTATCGTT TCTGGACGCT CAGGCGTGGC GACGAACGGC GTCAGATCGA GCTGGTCCGA 
GGGCGCCCGC AGGGCAGGCT TCTGGTGGCC AGGCTGAAGG GGATCGAGGA TCGCGACGGG 
GCGCGTGCCT TGGCGGATTT CGAAGTCTGC GTTCCCATCG CCCAACTGCC TCGGCTGGAC 
GAGGGCGAGT TTTACTGGCA TCAGCTCGAA GGCCTGCGAG TGGTCGACCG GGAAGGTCGC 
TTGTTCGGCA AGGTCGATCA TCTGCTGGAA ACCGGCGCCA ACGATGTGCT GGTGGTCAGA 
CCCTGTACCG GTAGCCTGGA CGACCGGGAG CGTCTCCTGC CCTATACGGA TCAGTGCGTG 
TTGCGGGTGG ATCTGGCGGC CGGCGAGATT CGGGTGGACT GGGATGCGGA CTTCTGA 

 

Protein sequence

MDMTPASADG LIVLGKITSV HGVRGEVKVY SFTDPIDNLL DYRFWTLRRG DERRQIELVR 
GRPQGRLLVA RLKGIEDRDG ARALADFEVC VPIAQLPRLD EGEFYWHQLE GLRVVDREGR 
LFGKVDHLLE TGANDVLVVR PCTGSLDDRE RLLPYTDQCV LRVDLAAGEI RVDWDADF