| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_39510 |
|---|
| Symbol | xerD |
|---|
| ID | 7762840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 4001036 |
|---|
| End bp | 4001932 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643806813 |
|---|
| Product | site-specific tyrosine recombinase XerD |
|---|
| Protein accession | YP_002801065 |
|---|
| Protein GI | 226945992 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGCG TCGAGCATCC ACAGATCGAG CGTTTTCTCG AAGCCCTCTG GCTGGAAAAG
GGCCTCTCGG CGCATACCCG GGCGGCCTAT CGCAGCGATC TCGAACTTTT CAACGGCTGG
CTGTGCGAGC GCGGCCTGGC GCTGGTCGAG GTGGGGCGCG AGCTGATCCT CGATCATCTG
GCCTGGCGGG TCGATGCCGG TTACAAGGCG CGCTCCACGG CACGTTTTCT TTCCGGTCTG
CGAGGCTTCT TCCGCTATCT GCTGCGCGAG GGCGTGATCG CCGGCGATCC GACCCTGCAG
GTGGAACTGC CGCAATTGGG CCGTCCCCTG CCCAAGTCCC TTTCCGAGGC CGATGTCGAG
GCGCTGCTGG CAGCGCCGGA AGACGACGAT CCGCTCGGGC TGCGCGACCG GGCCATGCTC
GAAGTGCTGT ATGCCTGTGG CCTGCGGGTC AGCGAACTGG TCGGCCTGCG CCTGGAGCAG
TTGAACCTGC GCCAGGGGGT GGTGCGGGTA TTCGGCAAGG GCAGCAAGGA GCGCCTGGTG
CCTCTGGGCG AGGAGGCCAT CGCCTGGCTC GAGCGCTATT TGGTCGAGGC CAGGCCGCTG
CTGCTGGGCG GGCGGCCGAG CGACGTGCTC TTTCCCAGCC TGCGTGGCGA GCAGATGACC
CGGCAGACCT TCTGGCACCG CATCAAGCAT CACGCCCGGC TGGCGGGGAT CGGCAAGAGT
CTGTCGCCGC ACACCCTGCG CCATGCCTTC GCCACCCATC TGCTCAATCA CGGTGCCGAT
CTTCGCGTGG TGCAGATGCT TCTCGGCCAC AGCGACCTGT CGACCACTCA GATCTATACC
CATATCGCCC GGGCACGCCT ACAGGAGCTG CACGCGCGGC ATCATCCGCG TGGCTGA
|
|---|
| Protein sequence | MPGVEHPQIE RFLEALWLEK GLSAHTRAAY RSDLELFNGW LCERGLALVE VGRELILDHL
AWRVDAGYKA RSTARFLSGL RGFFRYLLRE GVIAGDPTLQ VELPQLGRPL PKSLSEADVE
ALLAAPEDDD PLGLRDRAML EVLYACGLRV SELVGLRLEQ LNLRQGVVRV FGKGSKERLV
PLGEEAIAWL ERYLVEARPL LLGGRPSDVL FPSLRGEQMT RQTFWHRIKH HARLAGIGKS
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HIARARLQEL HARHHPRG
|
|---|
| |