| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_38130 |
|---|
| Symbol | |
|---|
| ID | 7762704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 3856890 |
|---|
| End bp | 3858170 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 643806678 |
|---|
| Product | OprD family outer membrane porin |
|---|
| Protein accession | YP_002800930 |
|---|
| Protein GI | 226945857 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.764823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCAC GCAACCCGCT GTCGATGGCG CGCGACGGCG CAAGCCTGAC CCTCGGCGCG
CTCCTGGCCC TGCCCCTCGC CGCGCATGCC GCAGGTTTCG TCGAAGACGC CAAGGGCACC
CTGACCCTGC GCAACTTCTT CATCAACCGC AACTTCAAGG GCGACAACGC CACCCGCAGC
AAGGCCGAGG AATGGACCCA GAACCTCCTC CTCGACCTCA AGTCCGGCTA CACCGAGGGC
CCGCTCGGCT TCGGCCTCGA CGTGCTCGGC CTCTACTCCG TCAAGCTCGA CGGCGGCAAG
GGCACCGGCG GCACCCAGTT GCTGCCGCTC GACCACGACG GCAAGCCCGC CGACCAGTTC
GGCCGCCTGG CGGTGGCCGG CAAGCTGAAG TTCTCGGAAA CCGAACTGCG CGCCGGCGAA
TGGGCGCTGG TACTGCCGAT CCTGCGTTCC GACGACGGCC GCTCGCTGCC GCAGACCTTC
CGCGGCTCCA TGCTCACCTC GAAGGAAATC GAGAACCTCA CCCTCCACGC CGGCCACATC
ACCGGCAACA GCCCGCGCGA CGACGGCAGC ATGGAGGAGA TGACCCTGTT CGGCACCAGT
CCCTACACCA GCGACCGCAC CTCCGACGAT TTCGACTTCG GCGGCCTCGA ATACAGCTTC
AACGGCAAGC GCACCCTGGT CGGCGTCTGG TACGCGCGCC TGAAGGACAT CTACAAGCAG
CGCTACATCC AGCTCCAGCA CAGCCAGCCG CTGGGCGGCG ACTGGACCCT GGGCGCCAAC
ATCGGCTACT TCGACGGCGA GGACGACGGC GAGGCGCTCG AAGGCCATCT GGACAACAAG
GCGCTGTCCG GGCTGTTCTC GCTCCGGACC GGCGCGCACA CCTTCTACCT GGGCCTGCAG
CGGATCAGCG GCGACAGCAA GTGGCTGCGG GTCAACGGCA CCAGCGGCGG CACCCTGGCC
AACGACAGCT ACAACTCCAG CTACGACAAC GCCCGCGAAC GCTCCTGGCA GCTACGCTAC
GACTACAACT TCGCCGCCCT GGGCATGCCG GGGCTGACCT TCATGACCCG CTACATCAGC
GGCAAGAACA TCCACGTCGG CGCCGTCGAC GACGGCGAGG AATGGGGCCG CGAGAGCGAA
GTGGCCTACG TGGTGCAGAG CGGCGCGGCG AAGAACCTGA CGCTGCGCTG GCGCAACACC
ACCATGCGTC GCGACTACGG CAGCGACAAC CAGTTCAACG AGCAACGCCT GATCATCCAG
TACCCGCTGT CGCTGTTCTG A
|
|---|
| Protein sequence | MTSRNPLSMA RDGASLTLGA LLALPLAAHA AGFVEDAKGT LTLRNFFINR NFKGDNATRS
KAEEWTQNLL LDLKSGYTEG PLGFGLDVLG LYSVKLDGGK GTGGTQLLPL DHDGKPADQF
GRLAVAGKLK FSETELRAGE WALVLPILRS DDGRSLPQTF RGSMLTSKEI ENLTLHAGHI
TGNSPRDDGS MEEMTLFGTS PYTSDRTSDD FDFGGLEYSF NGKRTLVGVW YARLKDIYKQ
RYIQLQHSQP LGGDWTLGAN IGYFDGEDDG EALEGHLDNK ALSGLFSLRT GAHTFYLGLQ
RISGDSKWLR VNGTSGGTLA NDSYNSSYDN ARERSWQLRY DYNFAALGMP GLTFMTRYIS
GKNIHVGAVD DGEEWGRESE VAYVVQSGAA KNLTLRWRNT TMRRDYGSDN QFNEQRLIIQ
YPLSLF
|
|---|
| |