Gene Avin_31620 details

Gene Information

• Locus tag: Avin_31620
• Symbol: cas5d
• ID: 7762062
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 3271199
• End bp: 3271873
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643806036
• Product: CRISPR-associated protein Cas5d
• Protein accession: YP_002800300
• Protein GI: 226945227
• TIGRFAM ID: [TIGR01876] CRISPR-associated protein Cas5, Dvulg subtype; [TIGR02593] CRISPR-associated protein Cas5, N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCCTACG GGATTCGCTT GCTGGTCTGG GGGGAGCGTG CCTGTTTCAC CCGGCCGGAA 
ATGAAGGTGG AGCGCGTCTC CTACGATGTC ATCACGCCCT CGGCAGCGCG GGGCATTCTC 
GAAGCTATCC ACTGGAAGCC GGCGATCTGC TGGGTGGTGG ATCGCATCCA TGTGCTGAAG 
CCGATCCGCT TCGAGTCGAT CCGCCGCAAC GAGGTGGGCG GCAAGCTGTC GGCGGCCAGC 
GTCGGCAAGG CCATGAAGGC CGGTCGCACG GATGGATTGA TTGCTCTGGC CGATGAGGAT 
CGTCAGCAGC GCGCCGCTAC CGTGTTGCGC GATGTGTCCT ATGTGATCGA AGCGCACTTC 
GAGCTGACTG CCCGTGCTGA TGCGAGCGAC TCGGAAGGCA AACACCTGGA CATCTTCAAT 
CGCCGGGCGC GCAAGGGGCA GTATTTTCAC GCCCCCTGCC TGGGCGTGCG GGAGTTTCCC 
GCCAGCTTCG AGCTGATCGA GCCTGACGAC GTGCTGCCGG CGGTGCCTGC TGATCTGCGG 
GGCGAGCGCG AGCTGGGCTG GATGCTGCAT GACATCGACT TTGCTAACGA TATGACACCG 
CATTTCTTCC GCGCAGTCAT GCGCGATGGC GTGATCGAGG TGCCGGCGCT GCGTAGCGAG 
GGGGTCAAGG CATGA 

 

Protein sequence

MAYGIRLLVW GERACFTRPE MKVERVSYDV ITPSAARGIL EAIHWKPAIC WVVDRIHVLK 
PIRFESIRRN EVGGKLSAAS VGKAMKAGRT DGLIALADED RQQRAATVLR DVSYVIEAHF 
ELTARADASD SEGKHLDIFN RRARKGQYFH APCLGVREFP ASFELIEPDD VLPAVPADLR 
GERELGWMLH DIDFANDMTP HFFRAVMRDG VIEVPALRSE GVKA