| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_30290 |
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| Symbol | ligA |
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| ID | 7761929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | - |
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| Start bp | 3138801 |
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| End bp | 3141155 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643805901 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_002800169 |
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| Protein GI | 226945096 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.301541 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACG CCCAGACCGC CGCCGAACGC ATCGCCCGGC TGCGCAGCGA GATCGACGAA
CACAACTACC GCTATTATGT GCTCGATGCG CCGAGCGTGC CGGACGCCGA GTACGATCGT
CTGTTCAACG AGCTCAAGGC CCTTGAGGCC GAACATCCCG AACTGGTCAC CCCGGAGTCG
CCGACCCAGC GCGTCGGTGG CGAGGCGCTG GCGGCCTTCG GCCAGGTGCG CCACGAGCTG
CCCATGCTCA GCCTGGGCAA TGCCTTCGCC GAGGAGGATC TGCTCGATTT CGACCGTAAC
GTGTGCAAGG GCCTGGACCG CGGCATCGAG GTGGTGGAGT ACAGTTGCGA GCCCAAGCTG
GACGGCCTGG CCGTCAGCCT GCTCTACGAG GACGGCCAAC TGGTGCGCGG CGCCACCCGC
GGCGACGGCA GCACCGGCGA GGACATCACC GCCAATGTGC GTACCGTGCG CAACATTCCG
CTCAGGCTGC ACGGCCAGGG CTGGCCGGCC GTGCTGGAGG TGCGCGGCGA AATCTACATG
CCGCGCGCCG GCTTCGAGGC GCTCAACGCC CGTGCCATCG AGAACGGCGG CAAGACCTTC
GCCAACCCGC GCAACGCCGC CGCCGGCAGC CTGCGCCAGC TCGACCCGAA GATCACCGCC
GGCCGGCCGC TGGAGTTCTG CGGCTACGGG ATCGGTCGCT TCGAGGGGGC CGAGGTGCCG
CAAACCCATA CCAGCCTCCT CGAGACCCTG AGGCGCTGGG GCCTGCCGAT CAGTCGCGAA
CTGCAACTGG CGCGAAGCGT TCAGGATTGC CTGGCCTACT ACCGTGCCAT CGGCGAGCGC
CGCCAGGGCC TGGCCTACGA CATCGATGGC GTGGTGTTCA AGGTCAATCG CCTGGACTGG
CAGCGCGAGC TGGGTTTCCG CGCCCGTACC CCGCATTGGG CCATCGCTTA CAAGTTCCCG
GCCCAGGAGG AACTCACCGA ACTGCTCGGC GTCGAGTTCC AGGTCGGCCG GACCGGCGCC
ATCACCCCGG TGGCGCGCCT GAAACCGGTG CAGGTGGCCG GTGTCACCGT GTCCAACGCC
AGCCTGCACA ACATGGACGA GGTGGCGCGC CTCGGCGTGA TGATCGGCGA CACGGTGATC
GTTCGCCGCG CCGGCGACGT GATTCCGCAG ATCATGCAGG TGGTCGGCGA GCGCCGGCCG
GCCGATGCCC GTCCGGTCGA GGTGCCGCGG CAGTGTCCGG TGTGCGGCTC GGCGGTGGAG
CGCACCCAGT TGGTCAAGCG CGGCAAGGGC AGGGCCTCGC TCAGCGAAGG AGCGATCTAC
CGCTGTGTCG GTCGCCTGGC CTGCCAGGCC CAGCTCAAGC AGGCGATCGT CCACTTCGTC
TCGCGACGCG CCATGGACAT CGACGGCCTC GGCGAGCGGA TCGTCGAGCA ACTGGTGGAC
ACCGGCCTGG TGAAGTCGCC GGCCGATCTC TACATCCTGA CCTTCGAACA ACTGGTGGTG
CTGGACGGCT TCGCCGAGGT CTCCAGCAAC AATCTGCTGG CGGCCATCGC CGCCAGCCGC
CGGCCGAGCC TGGCGCGCTT CATCTACGCG CTGGGCATTC CCGATGTCGG CGAGGAGACC
GCCAAGCGGC TGGCCCGCGC GCTCGGCTCG CTCACGCGCA TCGAGAAGGC CCTGCCCGAG
GTGCTCATCT GGCTGCCGGA CGTCGGCCTG GAAGTCGCCC ACGAGATCCA CAGCTTCTTC
CGGGACGAGC ACAACCTCAC GGTGATCGGG CAGTTGCTGG CGCGTGGCGT CGAACTGCAG
GAGGAAGGCG AATTGCACGC GGAGTTCGCC GCCTGCGCCA GCCTGGGCGA ACTGCTCGAC
AAACTGGACA TTCCGGGGAT CGCCGCCACC GGCGCGAAAA AGCTCGCCGA GGCGGCGGGC
AGCCTGGAGG CGGTGATCGG CCTCAGCCAG GACTGGCTGA CCCTGAACAC GACCAAAGGG
CTGTCGGAAA AGGCCAGGCA GGCGCTGCGC GAGTTCTTCG CCGTCCCCGC CAACGTCGAG
CACGCCCGTG CCATCGAGGG GCAATTGCGC GAATTCGGCA TGCACTGGGA AAGCGAGCGC
CGCTGCGCCG AGGGCCTGCC CCTGGCCGGG CAGACCTGGG TGCTGACCGG CACCCTGGAG
TCCATGAGCC GCGAGCAGGG CAAGGCGAGG CTGGAAAGCC TCGGCGCCAA GGTGGCCGGC
TCGGTCTCGG CGAAGACCGC TTGCGTGGTC GCCGGTCCCG GAGCCGGCTC GAAGCTGGCC
AAGGCCGGCG AACTGGGGGT GAAGGTGCTC GACGAGGAGG CTTTCCTCGC GCTGCTGCGG
CAGTTGGAGA GCTGA
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| Protein sequence | MTDAQTAAER IARLRSEIDE HNYRYYVLDA PSVPDAEYDR LFNELKALEA EHPELVTPES
PTQRVGGEAL AAFGQVRHEL PMLSLGNAFA EEDLLDFDRN VCKGLDRGIE VVEYSCEPKL
DGLAVSLLYE DGQLVRGATR GDGSTGEDIT ANVRTVRNIP LRLHGQGWPA VLEVRGEIYM
PRAGFEALNA RAIENGGKTF ANPRNAAAGS LRQLDPKITA GRPLEFCGYG IGRFEGAEVP
QTHTSLLETL RRWGLPISRE LQLARSVQDC LAYYRAIGER RQGLAYDIDG VVFKVNRLDW
QRELGFRART PHWAIAYKFP AQEELTELLG VEFQVGRTGA ITPVARLKPV QVAGVTVSNA
SLHNMDEVAR LGVMIGDTVI VRRAGDVIPQ IMQVVGERRP ADARPVEVPR QCPVCGSAVE
RTQLVKRGKG RASLSEGAIY RCVGRLACQA QLKQAIVHFV SRRAMDIDGL GERIVEQLVD
TGLVKSPADL YILTFEQLVV LDGFAEVSSN NLLAAIAASR RPSLARFIYA LGIPDVGEET
AKRLARALGS LTRIEKALPE VLIWLPDVGL EVAHEIHSFF RDEHNLTVIG QLLARGVELQ
EEGELHAEFA ACASLGELLD KLDIPGIAAT GAKKLAEAAG SLEAVIGLSQ DWLTLNTTKG
LSEKARQALR EFFAVPANVE HARAIEGQLR EFGMHWESER RCAEGLPLAG QTWVLTGTLE
SMSREQGKAR LESLGAKVAG SVSAKTACVV AGPGAGSKLA KAGELGVKVL DEEAFLALLR
QLES
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