| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_28610 |
|---|
| Symbol | |
|---|
| ID | 7761766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 2948583 |
|---|
| End bp | 2949188 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643805740 |
|---|
| Product | lytic transglycosylase |
|---|
| Protein accession | YP_002800008 |
|---|
| Protein GI | 226944935 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGGG TGACTGCGAT CGTGTTCGGC ATGGGCGCCG TGCTGGCGTC GGCGATGCCG
GCATATGGCG ATATCTACAG GGAGGTGGCG GCGGACGGCA GCATCGTCCT CACCAATGTC
CATCGCCGGG AGCGCAAGAG CGTGCGCCTG CGCCGCGAGC CACCGCCCGT GTCCGCGGCC
GCCGCACCGA AGCGCGATAC GCTGGCCGCT GCGCTGCCCT ATGCCGCGCT GGTGGCCGCC
GCGGCTGCCG AGCACGGCTT GCCCGAAGCG CTGTTGCATG CGCTGATCCG CGCCGAGTCC
AACTACGATC CGCGTGCCGT TTCGCCGAAG GGGGCGGCCG GTCTGATGCA GTTGATGCCG
GATACCGCCC GCGAACTGGG GGTGGTCGAT GTCTGGGACC CGGCCGCCAA TATCCATGGC
GGCGCCCGCT ACCTGAAGCG CCTGCTGGAT ATGTTCGATC AGGATCTCGG CCTGGCCGTG
GCCGCCTACA ATGCCGGTCC CGGGGCGGTC ATCGGTAGCG GCGGCGCCAT CCCGCCCTTC
GCCGAAACCC GGCGCTACGT GCCGAAGGTG CTCGAACACT ACCGCCGCCT GCAAAGCGGC
GGCTGA
|
|---|
| Protein sequence | MGRVTAIVFG MGAVLASAMP AYGDIYREVA ADGSIVLTNV HRRERKSVRL RREPPPVSAA
AAPKRDTLAA ALPYAALVAA AAAEHGLPEA LLHALIRAES NYDPRAVSPK GAAGLMQLMP
DTARELGVVD VWDPAANIHG GARYLKRLLD MFDQDLGLAV AAYNAGPGAV IGSGGAIPPF
AETRRYVPKV LEHYRRLQSG G
|
|---|
| |