Gene Avin_23780 details

Gene Information

• Locus tag: Avin_23780
• ID: 7761293
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 2381349
• End bp: 2381969
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 643805262
• Product: methylthioribulose-1-phosphate dehydratase
• Protein accession: YP_002799540
• Protein GI: 226944467
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
• TIGRFAM ID: [TIGR03328] methylthioribulose-1-phosphate dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCCGA CCCGCGCACA ACTGACCCGG CAGATCATCG AAGCCGGACG CTTCCTGTAC 
GGCCGCGGCT GGTCGCCGGC GACCAGCAGC AACTATTCGG CACGGCTGTC GCCCGGCGAA 
GCGCTGCTCA CCGTTTCCGG CAAGCACAAG GGCCAGCTCG GCGAGGACGA CGTGCTGGCC 
ACCGACATGG CCGGCAACAG CCTCGAGCCG GGCAAGAAAC CTTCGGCCGA GACCCTGCTG 
CACACCCAGT TGTACACTTG GAAGACCGAA ATCGGTGCGG TGCTGCACAC GCATTCGGTG 
AACGCCACCG TGCTCTCCCG GCTGATCCTG AGCGATTCTT TGGTATTCGC CGACTACGAG 
TTGCAGAAGG CCTTCGCCGG CATCGGTACC CACGAGTGCC AGATCTGCGT GCCGATCTTC 
GACAACGATC AGGACATCGC CCGCCTGGCC AGCCGGGTGC GGCCTTGGCT GGACGAGCAT 
CCCGACTGCG TCGGCTACCT GATCCGTGGC CACGGCCTGT ATACCTGGGG CGCCGCCATG 
AACGACGCGC TGCGCCAGGT GGAGGCCTTC GAGTTTCTCT TCGACTGCGA ACTGAAAATG 
CGTGCCCTGC AGGGCCGCTG A 

 

Protein sequence

MSPTRAQLTR QIIEAGRFLY GRGWSPATSS NYSARLSPGE ALLTVSGKHK GQLGEDDVLA 
TDMAGNSLEP GKKPSAETLL HTQLYTWKTE IGAVLHTHSV NATVLSRLIL SDSLVFADYE 
LQKAFAGIGT HECQICVPIF DNDQDIARLA SRVRPWLDEH PDCVGYLIRG HGLYTWGAAM 
NDALRQVEAF EFLFDCELKM RALQGR