Gene Avin_23220 details

Gene Information

• Locus tag: Avin_23220
• Symbol: prpC
• ID: 7761238
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 2317033
• End bp: 2318196
• Gene Length: 1164 bp
• Protein Length: 387 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 643805204
• Product: methylcitrate synthase
• Protein accession: YP_002799485
• Protein GI: 226944412
• COG category: [C] Energy production and conversion
• COG ID: [COG0372] Citrate synthase
• TIGRFAM ID: [TIGR01800] 2-methylcitrate synthase/citrate synthase II

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGCTA CCGCAGAAAC CACCACTGTT GGCTTCAAGC CGAAGAAGTC AGTGGCCCTG 
AGTGGCACCG CCGCCGGCAA TACCGCTCTG TGCACCGTGG GTCGCACCGG CAATGACCTG 
CACTATCGCG GCTATGACAT TCTCGACTTC GCCACCACCT GCGAATTCGA GGAGGTCGCC 
CATCTGCTGG TGCACGGCAA GCTGCCCAAT GTCGCCGAAC TGAACGGCTA CAAGGCCAAG 
CTCAAGTCCC TGCGCGGCCT GCCGGCCGGC GTGAAGGCCG CCCTCGAGCA GTTGCCGCCG 
TCCTCTCACC CGATGGACGT GATGCGCACC GGCGTGTCCG TGCTCGGCTG CCTGTCGCCC 
GAGAAGGAAG ACCACAACTA CCCCGGCGCC CGCGACATCG CCGACAAGCT GATGGCGTCC 
CTGGGCTCCA TGCTGCTGTA CTGGTACCAC TTCAGCCACA ACGGCAAGCG CATCGACGTG 
GAAACCGACG ACGACTCCAT CGGCGGCCAC TTCCTGCACC TGCTGCACGG CAAGAAGCCG 
AGCGACAGTT GGGTGCGCGC CATGCACACC TCGCTGATCC TCTACGCCGA GCACGAGTTC 
AACGCCTCCA CTTTCACCTC CCGGGTGATC TCCGGCACCG GCTCCGACAT GTTCTCCTGC 
ATCACCGGCG CCATCGGCGC GCTGCGCGGG CCGAAGCACG GCGGCGCCAA CGAGGTGGCC 
TTCGAGATCC AGAAACGTTA CGACACCCCG GACGAGGCCG AGGCCGATAT CCGTGCCCGC 
GTCGAGCGCA AGGAAGTCGT GATCGGCTTC GGCCACCCGG TCTACACCGT TGGCGATCCG 
CGCAACAAGG TGATCAAGGA AGTCGCCCGC GAGCTCAGCG TCGAACAGGG CAACACTAAG 
ATGTACGACA TCGCCGAGCG CCTCGAAAGC GTGATGTGGG AAATCAAGAA GATGTTCCCC 
AACCTGGATT GGTTCAGCGC CGTCAGCTAC CACATGATGG GCATTCCCAC CGCCATGTTC 
ACCCCGGTGT TCGTGATCGC CCGCACCTCC GGCTGGGCCG CCCACGCCAT CGAGCAGCGC 
ATCGACGGCA AGATCATCCG GCCGAGCGCC AACTACGTCG GTCCGGAAAA CCTGAAGTTC 
GTTCCGCTCA GGGAGCGCAA GTAA 

 

Protein sequence

MSATAETTTV GFKPKKSVAL SGTAAGNTAL CTVGRTGNDL HYRGYDILDF ATTCEFEEVA 
HLLVHGKLPN VAELNGYKAK LKSLRGLPAG VKAALEQLPP SSHPMDVMRT GVSVLGCLSP 
EKEDHNYPGA RDIADKLMAS LGSMLLYWYH FSHNGKRIDV ETDDDSIGGH FLHLLHGKKP 
SDSWVRAMHT SLILYAEHEF NASTFTSRVI SGTGSDMFSC ITGAIGALRG PKHGGANEVA 
FEIQKRYDTP DEAEADIRAR VERKEVVIGF GHPVYTVGDP RNKVIKEVAR ELSVEQGNTK 
MYDIAERLES VMWEIKKMFP NLDWFSAVSY HMMGIPTAMF TPVFVIARTS GWAAHAIEQR 
IDGKIIRPSA NYVGPENLKF VPLRERK