| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_20760 |
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| Symbol | |
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| ID | 7761001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | - |
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| Start bp | 2066888 |
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| End bp | 2068684 |
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| Gene Length | 1797 bp |
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| Protein Length | 598 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643804971 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_002799252 |
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| Protein GI | 226944179 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.577107 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCATT TCACGGATGA GATTGACGAA GACCTGCAGG AAAGGATGGC GCGCTACTTG
CGCGCTACCC AGGTCCAGGA GACTCATGGC GGCTGGCCGC AATACGTGGG AGGCGCGATC
GACCTGTCGT GCACGGTCAA GGCCTATTAT GCGCTCAAGG CCGCCGGCGA CTCCCCCGAA
GCGCCACATA TGCGTCGGGC GCGCGAGGCG GTGCTGGCGC TTGGCGGCGC CGCCAAAAGC
AACGTATTCA CCCGCATCCT ACTGGCGATG TTCGAGCAGG TCCCCTGGCG TGCCGTACCC
TATCTGCCGG TCGAAATCAT GCTGTTGCCG CGCTGGGCGC CAATCCATAT CGAAAAGATG
TCCTACTGGG CGCGGACCAC CCTGGTGCCC TTGACGATCC TCTGTTCGCT CAAGGCCCGG
GCTGCCAACC CCAAGCGAGT GGACATCCGC GAGCTGTTCG TCACTGCGCC GGAGCAGGAG
CGCCACTATT TCCTCCGTGG TGGCCTGCTG AACCGCATTT TCCTGGGACT GGACAAATTT
GCTCGTACGC TTGACCGCTG GATGCCGAAA TCGCTGCGTC AGCATGCTAT CCGCAAGGCC
GAGGCCTGGT TTTTGCCGCG CATGAATGGC GAAGACGGCC TGGGGGCGAT TTTCCCGCCG
ATGGTCAATT GCTACGAAGC GATGATCCTG CTCGGCTATC CCAAGGATCA TCCAGCCCGA
AAGACCTGCT TGCGCTCGAT CCAGAAGCTG ATTGTCCATC GTGACGACGG CTCGGCCTAC
TGCCAGCCTT GCGTTTCGCC GGTATGGGAT ACCGCCTGGA GTGCCATGGC CCTGATCCAC
AGTGGTGACG ATACGGCAAC CCAAACGGCC ATCGCACGGG CCGGCGACTG GCTCGTCCAG
CGGCAGGAGC TGGATTGCAG GGGCGACTGG GAAGCGCAGG CCCCCCAAGC GGCTCCAGGC
GGCTGGGCCT TCCAGTATGC CAACGGCTAT TATCCGGACA TCGACGACAC GGCACTGGTG
GCAGCTCTGT TGCACATATC GGACCGTCGT CGCGGACAGC CCGGGCAACA TGCCTTCAAC
ATCGATCGCG CCGTGGATTG GATGCTGGCC TTGCAGTCGA GGAATGGCGG CTTTGCCGCC
TTCGATGCCG ACAACACCCA CTACTACCTC AACGCCATTC CCTTCGCAGA CCATGGAGCC
TTGCTCGACC CCCCGACCGA GGACGTCTCC GGCCGCGTGG CCGCCTGCCT CGGCATATTG
AAGCGCGATC AAGACCGTGA CGGCCTGCGC CGCTGCATCG ACTACCTGCG CACGACCCAA
CAGCCCGACG GCAGTTGGTG GGGCCGCTGG GGCAGCAACT ATATCTACGG CACCTGGAGC
GCGCTTTCCG GCCTTGCCTT GGCCGGCGAG GACCTCCGCC AACCCTACCT GCGCAAATCC
GTCGACTGGC TACGCACGCG CCAGCACCCC GATGGCGGCT GGGGCGAGAC CAACGACAGC
TACATCGACC CGCACCTGGC CGGTACCAAC GCAGGAATCA GCACGCCACA CTCGACGGCA
TGGGCAGTAC TGGCCCAACT GGCCATGGGC GAAGTGGAGT CCGACTCGGT GAGACGCGGT
ATCGCTTTTC TGCTCGCCTG CCAGCAAACC GACGGACTCT GGTCCCATCC CTCGCACAAC
GCCCCCGGTT TTCCACGGGT TTACTACCTC AAGTATCACG GTTATGCCGC CTATTTCCCT
CTATACGCGC TGGCCCGCTA TCGGCATCTG TTGAATCGCT CCAGGGAGCA GCGGTGA
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| Protein sequence | MMHFTDEIDE DLQERMARYL RATQVQETHG GWPQYVGGAI DLSCTVKAYY ALKAAGDSPE
APHMRRAREA VLALGGAAKS NVFTRILLAM FEQVPWRAVP YLPVEIMLLP RWAPIHIEKM
SYWARTTLVP LTILCSLKAR AANPKRVDIR ELFVTAPEQE RHYFLRGGLL NRIFLGLDKF
ARTLDRWMPK SLRQHAIRKA EAWFLPRMNG EDGLGAIFPP MVNCYEAMIL LGYPKDHPAR
KTCLRSIQKL IVHRDDGSAY CQPCVSPVWD TAWSAMALIH SGDDTATQTA IARAGDWLVQ
RQELDCRGDW EAQAPQAAPG GWAFQYANGY YPDIDDTALV AALLHISDRR RGQPGQHAFN
IDRAVDWMLA LQSRNGGFAA FDADNTHYYL NAIPFADHGA LLDPPTEDVS GRVAACLGIL
KRDQDRDGLR RCIDYLRTTQ QPDGSWWGRW GSNYIYGTWS ALSGLALAGE DLRQPYLRKS
VDWLRTRQHP DGGWGETNDS YIDPHLAGTN AGISTPHSTA WAVLAQLAMG EVESDSVRRG
IAFLLACQQT DGLWSHPSHN APGFPRVYYL KYHGYAAYFP LYALARYRHL LNRSREQR
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