Gene Avin_20590 details

Gene Information

• Locus tag: Avin_20590
• Symbol: dxs-2
• ID: 7760985
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 2048876
• End bp: 2050777
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 643804956
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002799237
• Protein GI: 226944164
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAAGA CGTTCCACGA GATTCCCCGC GAGCGCCCCG CCACCCCCCT GCTGGACCGC 
GCCGCGACGC CGGACCGGCT GCGCCAGCTC GGCGAGGCGG AACTCGAAGT ACTGGCCGAC 
GAACTGCGCC AGGAACTGCT CTACACCGTC GGGCAGACCG GCGGGCACTT CGGCGCCGGG 
CTCGGCGTGA TCGAGCTGAC CATCGCCCTG CACTACGTCT TCGACACCCC CGGGGACCGC 
CTGGTGTGGG ACGTCGGCCA CCAGGCCTAC CCGCACAAGA TTCTCACCGG CCGCCGCGAA 
CGCATGCTCA CGTTGCGCCA GAAGGACGGC ATCGCCGCCT TCCCGCGCCG CTCGGAAAGC 
CCCTACGACA CCTTCGGCGT CGGCCACTCC AGCACCTCCA TCGGCGCCGC GCTGGGCATG 
GCCATCGCCG CGCGGCTGAA GGGCGAGCGG CGCCGCTGCA TCGCCGTGAT CGGCGACGGC 
GCGCTGACCG CCGGGATGGC CTTCGAGGCG CTCAACCACG CCTCGGACGT GCAGGCCGAC 
ATGCTGGTGG TGCTCAACGA CAACGACATG TCGATCTCCA AGAACGTCGG CGGGCTGTCC 
AACTACCTGG CCAAGATCCT CTCCAGCCGC ACCTACGCGA GCATGCGCGA GGGCAGCAAG 
AACATCCTCT CGCGCCTGCC CGGCGCCTGG GAGATCGCCC GGCGCACCGA GGAATACGCC 
AAGGGCATGC TGGTGCCCGG CACCCTGTTC GAGGAGCTCG GCTGGAACTA CATCGGCCCG 
ATCGACGGCC ACGACCTGCC GACCCTGCTC GCCACCCTGC GCAACATGCG CGACCTCAAG 
GGGCCGCAGC TCCTCCACGT GGTGACCAAG AAGGGCAAGG GCTTCGCCCC GGCCGAGGCC 
GATCCCATCG GCTACCACGC GATCACCAAG CTGGAGCCCG AGGGCAGCGC CCCGCGCCAG 
CCCGGCCCTC CCCGATACTC CAGCGTCTTC GGCCGCTGGC TGTGCGACAT GGCCGCCGCC 
GATCCGCGCC TGGCCGGCAT CACCCCGGCG ATGAAGGAGG GCTCCGACCT GGTCGCCTTC 
AGCCAGCGCT TCCCGGAGCG CTACTTCGAC GTGGCCATCG CCGAGCAGCA CGCCGTGACC 
CTCGCCGCCG GCATGGCCTG CGACGGCCTC AAGCCGGTGG TGGCGATCTA CTCGACCTTC 
CTGCAGCGCG CCTACGACCA GTTGATCCAC GACGTCGCGG TGCAGAACCT CGACGTGCTG 
TTCGCCATCG ACCGCGCCGG CCTGGTCGGC GAGGACGGCC CGACCCACGC CGGCAGCTTC 
GACCTCTCCT ACCTGCGCTG CATCCCCGGC ATGCTGGTGA TGACCCCCAG CGACGAGAAC 
GAGCTGCGCC GGCTGCTCAC CACCGGCTAC CTGTTCGAAG GCCCGGCGGC GGTGCGCTAC 
CCGCGCGGCA GCGGACCGAA CGCGGCCCTC GAGCCGGGCC TGGAGCCCTT GCCGATCGGC 
AAGGGCGTGC TGCGCCGCCG GAGCGGGAAG AGCGACGGCC CGCGGGTCGC CCTGCTGGTG 
TTCGGCGTGC AGGTGGCCGA GGCGCTGCGG GTGGCCGGGA AGCTGGACGC CACGGTGGCC 
GACATGCGCT TCGTCAAGCC GCTGGACGAG GAACTGGTAC GCGAACTGGC CGCCGGCCAC 
GAGCTGCTGG TGACCGTCGA GGAGAACAGC ATCATGGGCG GCGCCGGCAG CGCGGTGGCG 
GAATACCTCG CCGAGGCCGG CCTCCTCAGG CCGCTCCTCC ACCTGGGCCT GCCGGACTAT 
TACGTGGAAC ACGCCCGGCC CGCGGAAATG CTCGCCGAAT GCGGCCTGGA CGCCGCTGGC 
ATCGAGGCGG CGGTGTGCGA ACGGCTGAAT ATGCTGAGCT GA 

 

Protein sequence

MPKTFHEIPR ERPATPLLDR AATPDRLRQL GEAELEVLAD ELRQELLYTV GQTGGHFGAG 
LGVIELTIAL HYVFDTPGDR LVWDVGHQAY PHKILTGRRE RMLTLRQKDG IAAFPRRSES 
PYDTFGVGHS STSIGAALGM AIAARLKGER RRCIAVIGDG ALTAGMAFEA LNHASDVQAD 
MLVVLNDNDM SISKNVGGLS NYLAKILSSR TYASMREGSK NILSRLPGAW EIARRTEEYA 
KGMLVPGTLF EELGWNYIGP IDGHDLPTLL ATLRNMRDLK GPQLLHVVTK KGKGFAPAEA 
DPIGYHAITK LEPEGSAPRQ PGPPRYSSVF GRWLCDMAAA DPRLAGITPA MKEGSDLVAF 
SQRFPERYFD VAIAEQHAVT LAAGMACDGL KPVVAIYSTF LQRAYDQLIH DVAVQNLDVL 
FAIDRAGLVG EDGPTHAGSF DLSYLRCIPG MLVMTPSDEN ELRRLLTTGY LFEGPAAVRY 
PRGSGPNAAL EPGLEPLPIG KGVLRRRSGK SDGPRVALLV FGVQVAEALR VAGKLDATVA 
DMRFVKPLDE ELVRELAAGH ELLVTVEENS IMGGAGSAVA EYLAEAGLLR PLLHLGLPDY 
YVEHARPAEM LAECGLDAAG IEAAVCERLN MLS