Gene Avin_20400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_20400 
Symbol 
ID7764123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand+ 
Start bp2030600 
End bp2031277 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content60% 
IMG OID643804936 
Productgroup II intron-encoding maturase 
Protein accessionYP_002799218 
Protein GI226944145 
COG category[L] Replication, recombination and repair 
COG ID[COG3344] Retron-type reverse transcriptase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCCAG TAGGCGTCAG CGTCTCGTCG AATACCGAAA TGCAGAAATT TCTCGCAGAG 
AAGACTGTCA CCCCGAGTCC CGGACAGAAT CCGAGGACGA CGCCTGGCAG CGCAAAGGTA 
TCGGCGGCGT CGATGGCGTG GACGAATGCG GAGCCGGACA CGTTGATGGA GCGGGTGCTC 
GCACCTGCCA ACCTCAAGCG TGCGTATCAA CAGGTAGTCA GGAACAGGGG TGCACCGGGT 
GCCGACGGCA TGACGGTCGC CGACCTGGCG GGCTACGTGA AACAGTATTG GCCGATCCTC 
AAGGCCAGAT TGCTGGCAGG TGAGTACCAC CCCCAAGCGG TACGGGCGGT CGAAATTCCC 
AAGCCGCAAG GCGGCACAAG GCAGTTGGGT ATCCCCAGCG TCGTGGATCG GCTGATTCAA 
CAAGCCCTGC TGCAACAGCT TGTGCCGATC TTCGATCCTC TGTTCTCGGA CTACAGCTAC 
GGCTTCCGTC CGGGTAGAAG CGCTCACCAG GCCGTTGAGA TGGCTCGTGC CCATGTGGCG 
GCGGGTCAGC GTTGGTGTGT GGAGCTCGAT GTGGAGAAAT TCTTCGATCG GGTCAACCAC 
GACGTCTTGA TGGCCTGCGT GGAACGTCGT GTCGAAGACA AGCAGGTGCT CAGGCTCATC 
CGCCGTTACC TCGAATGA
 
Protein sequence
MPPVGVSVSS NTEMQKFLAE KTVTPSPGQN PRTTPGSAKV SAASMAWTNA EPDTLMERVL 
APANLKRAYQ QVVRNRGAPG ADGMTVADLA GYVKQYWPIL KARLLAGEYH PQAVRAVEIP 
KPQGGTRQLG IPSVVDRLIQ QALLQQLVPI FDPLFSDYSY GFRPGRSAHQ AVEMARAHVA 
AGQRWCVELD VEKFFDRVNH DVLMACVERR VEDKQVLRLI RRYLE