| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_17350 |
|---|
| Symbol | |
|---|
| ID | 7760670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1718980 |
|---|
| End bp | 1721073 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804634 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase |
|---|
| Protein accession | YP_002798923 |
|---|
| Protein GI | 226943850 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCACG ACGGTGTGGC GGTGCTATCG CTCGATCGTC CTCCCATCAA CAATCTTTCC
TTCGAATTGC GGACTCATTT ATTGCAGGCA TTGGATGCCG CCAATGCTGA TCCGGCGGTC
GAGGCCATAG TGCTCCATGG CAACGACAAG GTGTTTTCCG GCGGGGTCGA CATCAATGAA
TTCGGTTCCG ATCTGGCGAC CCGCAGTCCT TCCCTGCCGG AATTGATCCG CGCCGTGGAA
AACAGCCGCA AGCCCGTGGT GGCCGCGCTG GGCGACCTGT GCCTGGGCGG CGGGCTCGAA
CTGGCGCTCG GCTGTCATTA CCGGGTTTTC TCCGCCTCCG CCAGGATCGG GCTGCCGGAG
GTGACCCTGG GGCTGTTGCC GGGCGCCGGC GGAACCCAGC TTCTGCCGCG GGCCATCGGG
CTCGATGCCG CCCTGAACCT CATCCTCTCC GGGCGGCAGC AGGCGGCGGC GGATTTCCGG
GACACGGCCC TGGTCGACGA ACTGGCGACG GAGGATCTGC GCGCTGCGGC CGTGGATTTC
GCCCGCCGCC TGTCGGCCGA CACGGTCCCC TGGCCACGCC TGCGCGATCG TCCGCTGCGC
GTGGAGGTCG AGGACGAACT CTATATCCAT TTCGTCCGCG ACCGGCTCAA GGGCCAGAAG
GGGCAGGGGC CGGCGCCGCT GGCCGCGCTG GAGGCCGTGG CCGCCGCCGG GCGCCTGCCG
GTGGACGAGG GGCTGGAAGA GGAAGGTCGC TTGTTCGCCG GGCTGCATGC CGGTCCGCAG
TCGCGCGCCC TGTGCCATGC CTTCCTGGCC GAGCGGGCCG CCGGGAAGAT TCCCGGCATC
GACGACTCCA CGCCGACGAT TCCGGTCGAG CGGGTCGGCG TGGTGGGTGC CGGCACCATG
GGCACCGGCA TCGCCATCGT CTTTCTGAAC GCCGGTTTCG AAGTGGCGCT GCTGGAAAGC
GGCGAACAGG CCCTGGAACG GGGTCTGGCC GTGGTCCGCG AGCACTTCGC CGGGCTGCTG
GCGAAAAAGC GCCTGGACCA GGCGCAGTGC GATGCCCTGC TCGGCAAGCT TTCCGGCAGC
CTGGACTATG CCGCGCTGGG CGATGTCCAA CTGGCCGTCG AGGCGGTGTT CGAGGACCTG
GAGGTCAAGC GCCAGGTGCT GCGGCGGCTG GACGAGGCGC TGCCGGACGG CGCGATCCTC
GCCAGCAATA CCTCCACGCT GGACCTGAAC CTGCTGGCCG AGGCCACCTC GCGGCCGGAG
TCGGTGGTGG GCCTGCATTT CTTCAGTCCG GCCCAGGTCA TGCGCCTGCT CGAAGTGGTG
CGCGGCCGGC GCACCGCCGA CTCCGTCATG GCCACGGCCA TGCGCCTGGG CAAGCGCCTG
CAGAAGGTGA GCGTGGCGTC CGGCGTGTGC GACGGTTTCA TCGGTAACCG CATGCTCAAC
GAATACCTGC GCGTCGCCGG CCTGCTGCTG GATGCCGGCG CCTTGCCCTG GCAGATCGAC
CGGGCGCTGG AGACCTGGGG CATGGCCATG GGGCCGTTTC GCATGTGCGA CATGGCCGGC
AACGACATCG GCTGGGCGAT CCGCAAGCGG CAACGGGCGG CCGATCCCGG CCTGCGCTTT
TCCGCGACGG CCGATCTTTT ATGCGAGCAG GGCCGTTTCG GGCAGAAGAC CGGCAAGGGT
TGGTACCGCT ACGAGGCGGG GCGGCGCGGC GGTACTCCGG ACCCGGAAGT CGAGCGACTG
ATCGACGCTT ATCGCACCCG CGCGGGGCTG CTACCGCGGA CGATCGGCGA CCGGGAAATC
GTCGAGCGCT GCATCTATGC CCTGGTGAAC GAGGGCGCCC GCCTGCTGGA AGAGGGCATC
GCATTGCGGG CATCGGATGT GGATGTGGTT TATCTGGCCG GTTACGGCTT TCCCAGGTTG
CGTGGTGGCC CGATGCACTA TGCCGAGGAG CAGGGCCTGG CCAATGTCGT ACGGCGCATG
CGCGAGTTCG CGTGCGAAGA AGGGGGCGAC GCGCGTTTCT GGACGCCGGC GCCGTTGCTG
GTGCGCCTCG CCGAACACGA CCTCGGCTTC GGCCGGGCGG GAGAACTGCA ATGA
|
|---|
| Protein sequence | MLHDGVAVLS LDRPPINNLS FELRTHLLQA LDAANADPAV EAIVLHGNDK VFSGGVDINE
FGSDLATRSP SLPELIRAVE NSRKPVVAAL GDLCLGGGLE LALGCHYRVF SASARIGLPE
VTLGLLPGAG GTQLLPRAIG LDAALNLILS GRQQAAADFR DTALVDELAT EDLRAAAVDF
ARRLSADTVP WPRLRDRPLR VEVEDELYIH FVRDRLKGQK GQGPAPLAAL EAVAAAGRLP
VDEGLEEEGR LFAGLHAGPQ SRALCHAFLA ERAAGKIPGI DDSTPTIPVE RVGVVGAGTM
GTGIAIVFLN AGFEVALLES GEQALERGLA VVREHFAGLL AKKRLDQAQC DALLGKLSGS
LDYAALGDVQ LAVEAVFEDL EVKRQVLRRL DEALPDGAIL ASNTSTLDLN LLAEATSRPE
SVVGLHFFSP AQVMRLLEVV RGRRTADSVM ATAMRLGKRL QKVSVASGVC DGFIGNRMLN
EYLRVAGLLL DAGALPWQID RALETWGMAM GPFRMCDMAG NDIGWAIRKR QRAADPGLRF
SATADLLCEQ GRFGQKTGKG WYRYEAGRRG GTPDPEVERL IDAYRTRAGL LPRTIGDREI
VERCIYALVN EGARLLEEGI ALRASDVDVV YLAGYGFPRL RGGPMHYAEE QGLANVVRRM
REFACEEGGD ARFWTPAPLL VRLAEHDLGF GRAGELQ
|
|---|
| |