| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_17200 |
|---|
| Symbol | |
|---|
| ID | 7760655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1704588 |
|---|
| End bp | 1705730 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804619 |
|---|
| Product | CRISPR-associated protein, CT1975 |
|---|
| Protein accession | YP_002798908 |
|---|
| Protein GI | 226943835 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01869] CRISPR system CASCADE complex protein CasC/Cse4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGT TCGTCGAGTT TCACCTGATC CAGAATTTCG CTCCGTCCAA TCTCAACCGC
GACGACACCG GCGCGCCCAA GGATGCGCTG TTCGGCGGCT ACCGCCGGGC ACGGGTGAGC
AGCCAGTGCT TCAAGCGGGC GATCCGCCTG GCGGCGCAGG CGCACGAACT GGTGGCGCCG
GAACATTGCG GCGTGCGGAC CAAGAAGCTG CTGGGCCTCC TGCTGGAGCG TCTGGAGCAT
CGCGATCCGC AGGAGGCCCG ACGCAGGATC GAAACCGCCC TGGGCGCCGC CGGCCTCAAG
CTCAAGGACG ATGGCAAGAC CGAATACCTG CTGTTCCTCG GCGAGGGCGA GATCGCCGGT
TTCGCCGCAC TGATCGAGCA ACACTGGGAC GAACTGGCCG CTGCGCAGGC CGGCGGCGAG
AAGAAGGGCA AGAAGGAAGC CAGGGCCAGC GCGCCCGCCG AACTGGTGAA GAAGGCCAAG
GCCCTGCTCG ATGGCGGCAA GGCGGTAGAC GTGGCGCTGT TCGGGCGGAT GCTCGCCGAC
CTGCCGGAAG TCAACCAGGA CGCCGCCTGC CAGGTCGCCC ACGCGATCAG TACGCACCGC
GTCGAGCGCG AGTTCGACTA CTTCACGGCG GTGGACGACG AGGGCGCTCC GGAGGAAACC
GGCGCCGGGA TGATCGGCCA GGTGGAGTTC AACTCGGCGA CCTTCTACCG CTATGCGGTG
GTCGACGCCC ACAAGCTCCT GAGCAACCTG CAGGGCGACC GCGAACTGAC CCTGGCGGCG
CTGGAGGCTT TCACCCAGGC CAAGGTGCGC GCCATTCCCG CCGGCAAGCA GAACAGCTTC
GCCGCCCACA ACCTGCCGGC CTTCGTCGGC GTCTGCCTGC GCCATGCCAA CCCGCTCAAT
CTGGCCAACG CCTTCGAGAA GCCGATCAGT CCCGGCCACG ACCAGGCGCT GAGCAGCCTG
TCCGTGGCCG AACTGGCCGG GCACGAGGAA AAACTGGCCG GCGTCTATGC CGACGGCAGC
GATCGCTGGG CCTATCTGGA CCTGAGCGGC GCCTGGCCGG TGGGCAAGGG CGAAGCCCAG
GCCAACCTGG GTGCCCTGGC CCGCTGGGTG AGGGAGCGGG TCGCCGCCGA ACTGGAGGGC
TGA
|
|---|
| Protein sequence | MTLFVEFHLI QNFAPSNLNR DDTGAPKDAL FGGYRRARVS SQCFKRAIRL AAQAHELVAP
EHCGVRTKKL LGLLLERLEH RDPQEARRRI ETALGAAGLK LKDDGKTEYL LFLGEGEIAG
FAALIEQHWD ELAAAQAGGE KKGKKEARAS APAELVKKAK ALLDGGKAVD VALFGRMLAD
LPEVNQDAAC QVAHAISTHR VEREFDYFTA VDDEGAPEET GAGMIGQVEF NSATFYRYAV
VDAHKLLSNL QGDRELTLAA LEAFTQAKVR AIPAGKQNSF AAHNLPAFVG VCLRHANPLN
LANAFEKPIS PGHDQALSSL SVAELAGHEE KLAGVYADGS DRWAYLDLSG AWPVGKGEAQ
ANLGALARWV RERVAAELEG
|
|---|
| |