| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_17170 |
|---|
| Symbol | |
|---|
| ID | 7760652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1699773 |
|---|
| End bp | 1702478 |
|---|
| Gene Length | 2706 bp |
|---|
| Protein Length | 901 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643804616 |
|---|
| Product | CRISPR-associated helicase Cas3, core |
|---|
| Protein accession | YP_002798905 |
|---|
| Protein GI | 226943832 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.908442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGA CACGCTTTTC CGAACTGCCT GCCTGCAGTC GCGCGCTCTG GGCCAAGAGC
GGCGAGCCGG GAGGGCATGG CCTGCTGGCG CACATGCTGG ACGTGGCGGC TGTCGCCGAG
ACGCTTCTGG AACGCGAGCC GCCAGCCACG CACGAATGCT TCGCCGCGCA GTTCGGCTTG
CCGGAGTCCG TTTTTTCCCG GCATGTCGCC GCGCTGGCGG GGTTGCACGA TTTCGGCAAG
GCCATTCCCG GTTTCCAGGC CAAGTGGCCG GCGGGGCGGG AGCGTGACGA GGCGCATGGC
CTGGGATTCG CCGAACCTTC CCTGCGCGTC ACCGATCACG CCTGCGCCGG CGCGGCCCTG
CTCTGGCGGC ATCTGCCGGC ACAAGGTGCC GAGCCGGGCT GGATCATGGG CGTGCTGCAG
GCGATCGGTG CGCACCACGG CTACAACCCC AGCGTTCCGG AAATCCGCAC GGCCGTGCCG
GCGCTCGAGG CACCGGGTTG GGCCCCGGCG CGCCAGGCAC TGTTCGAGGC TTACTGGCAG
GCCCTGGCCC CCGAAGGCGT ACCCGCGGCC GACGAGTTGC CGCTGCCCGC CGTGGCCTGG
CTGGCCGGGC TGACCAGCGT GGCCGACTGG ATCGCATCCG ATCCCGACTG GTTCCCGCCC
GGCGAGCGGG AGGATTCGCT CGCCGGGCAT TTCCGCCAGG CCGGGAAGCT CGCCGCCAAG
GCTCTGGAAG AGATCGGCTG GAGTCCTCAT CGCGCCCTGT TGCGGGAGCC GGCGACGACG
GACGAGTTGC TCGGCCGCAT CGTTCGCCGC GAGGGCGTGG CCGCCCGTTC CCTGCAGGTC
GAGGGCGATC GCTTGTTGAG CGAGGCGCGG GGGCCGTCCC TGCTGCTGGT CGAGGCGCCG
ATGGGGGAGG GCAAGACCGA GCTGGCCTTT CTCGCCCACC TGCGCCTGCA AGCGGCCAAC
GACCATCGCG GCCTGTATGT CGCCCTGCCG ACCCAGGCGA TCGGCAATGC CCTGTTCGAC
CGGGCACTGA CCTTCCTGCG CGGCTTCGAC GACCGCCAGC CGCTGGACCG CCAGCCGCTG
GATCGCCAGC CGCTGGACAT TCAGTTGGTG CACGGCGGCG CCGCGCTGGA CGAACGGGTA
CAGCGCCTGC GCGACATCCA CGGCGGGACG GACGACAGCA TCGCCTCGTC CGCCTGGTTC
TCCCAGCGCC GCCGTCCGCT GCTGTCGCCC TATGGCGTCG GCACCGTCGA CCAGGCGCTG
TTCGCCGCCC TGAACGTCAA GCACCATTTC GTTCGCCTCT GGGGCCTGGC CAACCGGGTG
GTGGTACTGG ACGAGGTGCA TGCCTACGAC GTCTACACCG GCGGTCTGAT CGAGTCCCTG
TTGCGCTGGC TCAGGGCGCT CGGTAGCTCG GTGGTGCTGA TGAGCGCGAC CCTGCCCGAA
CAGCGGCGAA ATGCCTTGCT GCAAGCCTGG GGCGTGGCGA CGGAGCGGGT GCCGGAGCTG
CCCTATCCGC GCCTGCTGCT GGCGGACGGC CGAGGCTTGC GGGCCACGAC CTTCGATTCC
CGGCCGTTGC CGCCGATCGC CCTGGAAAGC CTCGACGAGG ACCTGGACGA TCTGGCCGCC
TGCGCCCTGC GTCTGCTCGA CGGCGGCGGG CATGGCGCGC TGATCGTTAA CACGGTGGCG
CGTGCCCAGG AACTCTACCG CCGCCTGCAG CCGCGGCTCG ACGAAGAGGT GCGGCTGATC
CTGTTCCATG CCCGTTTCCC GGCCGACGAG CGCGGCATGC GGGAGCGGCA GGTGCTGGAG
GCGTTCGGCA ACGCCGGCAC CGACCGGCCG CGTCCCGGCC GGTGCCTGCT GATCGCCACC
CAGGTCGCCG AGCAATCCCT GGACATCGAT TTCGACTTCT TGATCACCGA CCTGGCACCG
GTCGACCTGA TCCTGCAGCG CGCCGGACGC CTGCACCGCC ATCGGCGGGC CAGGGTGCCG
GCCCATGCCG GGGCCCGGCT GTTCGTCGCC GGACTGGACC CGCGGCGCCT GCCCGGACTG
GAGAAGACCG TCTACGAGCC CTACCTCCTC GGTCGCACCT GGGCCCTGTT GTCCCGCGAG
ACGGGTCTGC GCTTGCCATG GGACATCGAC CGGCTGGTGC AGGCGGTCTA TGGCGACGCG
CCGCTGCCGG ACGACCTGGA TGCGCAGGTA CGGGCGCGTA TCGAAGTCGA AATCCATGGC
GAGTATCTCG CCCGTCTGAA AGAGGAGCGG CAGAAGGCGC TGAACATCGC CATCGACCCA
TCCGCGGCGC CGCAGAACGC CTATCTCGAC AAGCCGCGCG GCAATGAGGA GGGCGAGGGG
CCGGGCCTGA CCAAGCGCAC GCGCCTGGGC GACGCCGCCG TCGCCCTGGT GCCGGTATAC
CGGGTGCCGG ACGGCTGGAG CCTGCGGCCG GACGGCGAAG CCTTCGATCC GTCGCTGCCG
CTGTCCGATT TCCTGGCCCG CCAACTCCAT GGCCGCCGGA TGAAATGCAG TCACGGGCTT
GTCGTGAGTC ACTTTGCCGG CGTCGAGCCT CCGCCATCCT TCGCCGGGCA TCCGTTGCTC
GGACATCTGA AACCGCTGTT GCTGGAAGAT GGCTGCCACG TCATCGACAG GCTCGTCCTG
CGTCTGGATG AGCACCTGGG ACTGGTCTAT GAGTCGGCCG AGGCCGACAT TCAACCCGAG
GACTGA
|
|---|
| Protein sequence | MTTTRFSELP ACSRALWAKS GEPGGHGLLA HMLDVAAVAE TLLEREPPAT HECFAAQFGL
PESVFSRHVA ALAGLHDFGK AIPGFQAKWP AGRERDEAHG LGFAEPSLRV TDHACAGAAL
LWRHLPAQGA EPGWIMGVLQ AIGAHHGYNP SVPEIRTAVP ALEAPGWAPA RQALFEAYWQ
ALAPEGVPAA DELPLPAVAW LAGLTSVADW IASDPDWFPP GEREDSLAGH FRQAGKLAAK
ALEEIGWSPH RALLREPATT DELLGRIVRR EGVAARSLQV EGDRLLSEAR GPSLLLVEAP
MGEGKTELAF LAHLRLQAAN DHRGLYVALP TQAIGNALFD RALTFLRGFD DRQPLDRQPL
DRQPLDIQLV HGGAALDERV QRLRDIHGGT DDSIASSAWF SQRRRPLLSP YGVGTVDQAL
FAALNVKHHF VRLWGLANRV VVLDEVHAYD VYTGGLIESL LRWLRALGSS VVLMSATLPE
QRRNALLQAW GVATERVPEL PYPRLLLADG RGLRATTFDS RPLPPIALES LDEDLDDLAA
CALRLLDGGG HGALIVNTVA RAQELYRRLQ PRLDEEVRLI LFHARFPADE RGMRERQVLE
AFGNAGTDRP RPGRCLLIAT QVAEQSLDID FDFLITDLAP VDLILQRAGR LHRHRRARVP
AHAGARLFVA GLDPRRLPGL EKTVYEPYLL GRTWALLSRE TGLRLPWDID RLVQAVYGDA
PLPDDLDAQV RARIEVEIHG EYLARLKEER QKALNIAIDP SAAPQNAYLD KPRGNEEGEG
PGLTKRTRLG DAAVALVPVY RVPDGWSLRP DGEAFDPSLP LSDFLARQLH GRRMKCSHGL
VVSHFAGVEP PPSFAGHPLL GHLKPLLLED GCHVIDRLVL RLDEHLGLVY ESAEADIQPE
D
|
|---|
| |