| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_16070 |
|---|
| Symbol | gspD |
|---|
| ID | 7760542 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1586433 |
|---|
| End bp | 1588691 |
|---|
| Gene Length | 2259 bp |
|---|
| Protein Length | 752 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804507 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_002798797 |
|---|
| Protein GI | 226943724 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.14269 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGCC GTACACGTCC CGCACCGCCT GCCCGGCGCC TCCCGCGCCA CTCCCTCGGC
CCGCTCGCCC TGAGCCTGCT GCTGGCCGGT TGCGCCATCG ACCCCAACCC GGAGCCCCTG
CCCGGCCCGC TGCGCCCGCC GATGCGCCAG GAAGCCGGCG AAAGCACCCT GCGGGCCGAA
GCGGTGCGAG GCGAACAGGC ACCCAAGATC CCGCGCTTCC AGACGACGCC CGGCCAGCAT
CTTCAGCAGG GGCCGAGCTA CGTCGTCGCC AGCGCCGACA AGCTCGGCCA GGACCTCACC
GGCGAGCCGA TCACCCTCAA CCTGAACAAC TTCCCGCTGC CGGCCTTCAT CAACGAGGTG
TTCGGCAACC GCCTCGGCCT GTCCTTCGGC ATCAGTCCGG AACTGCAGGG CAAGACCGAC
CTGATCTCCC TGCGCCTGAG CGAACCGCAG ACACCGGCCG ACCTCTTCGC CACCGCCCGC
TTCGTGCTCT CCGAATACGG CGTCGCCGTC ACCGAACGCG AAGGCGTGCT GTTCTTCCAG
TCCGCCCAGA ACGCCCCCAA CGACAGCCTG CCCCTGCTGG TCAGCGGTGG CGCCCTGCCC
GAGGTGCCCA TGTCGCACCG CCCCGTGTTC CAGCAGATCC CCATGCGCGT GGTGCGCAGC
GACTCCATGG TCGCCTGGCT CAAGGACATG TTCGCCGGCA GCAGCCTGAA GGTCAGTAGC
GACCCGCTGA GCAATGCGGT GATGCTGCGC GGCCCCATCG ATCTCATCCG CCAGGCCAGC
CAGGCCATCG AACTGTTCGA CCGGCCAGCC CTCAAGGGTA GCCACAGCCT GGCCATCAGC
CCCGTCTACG CCTCGGCCGA CGAACTCGGC ACGGCGCTGG TCAAGGTGCT CCAGGCCGAG
GGTTACGACG TATCGGAGAA CCCACCGCTC GGTGGCGTCG TCGTGCTCAA GCTCAAGGAG
CTGCAGCGCC TGATCGTCTT CGCCGCCGAC CCGGCGATCC TCGCCACCGC CCGCCAGTGG
GTCGAACTGC TCGACCGCCA GAGCCAGGAA CAGGTGGAGA ACGGCCTGTT CCTCTACCAG
GTGCGCAACA CCCAGGCCGC CGGCATCGCC AGCATGCTCG GCGCCCTCGG CTACAGCGCG
ACCATCCCGG ACACCGGCCT CAACACCAGC AACACCGTCA CCCCCACCGG CGCCTCCACT
GGCGAAAGCC TGGCCACCAG CGGACCGATC CGCAGCGTCA CCGGCACCGG CGCGAACGCC
CGCGCCAGCG CCCCGACCAG CATCGCCGGC AACCCCGAAC AGGGCAGCGT GGTGGTCGAC
GCCAACCGCA ACGCCATCAT CTACAAAGGC AGCGGCCAGG AATGGCTGAA GCTGCGCCCG
CTCCTGGAAG AACTGGACCG TCCGGTGCCC TCGGTGATAA TCGACGTGCT GCTCGCCGAG
GTGAACCTCA ACGACAGGGA AGGCCTCGGC GTCGACTGGC AGAACATCAC CGGTAGCCTC
GGCAGCAAGC AACTGATCTT CGGCACCGCC AACGGCATAG GTTCGAGCGG CCTGAACATC
AGCGCCCTGA ACAGCGCCGG GCAGACCAAG GCCACCCTCA ACGCCTTCTA CGACAACAAC
CAGGCGGTGA TCCGCTCCAG TCCCAAGCTG ATGGTGCGCA GCGGCGAGGA GGCGACCATC
GAGGTCGGCA ACGAGATTCC CGTGGTCACC GGCACCACCC AGTCCACCGA CACCGACAAC
GCGCCCATCA CCCAGACCGT GCAGTACCGC AAGACCGGCG TGCTGCTCAA CATCAAGCCC
ACCGTGCAGG CCAGCGGCGT GGTCGACCTG AAGATCAGCC AGGAGCTTTC CGAAAGCACC
GATACCGGCA CCGGCGATAC CCTCACCCCG ATCATCAACA ACCGCCGGGT GGAAACCGCC
CTCACCCTGC GCGACGGCGG CTCGGTGATG CTCGCCGGAC TGATCTCCAG CAGCAAGGGC
AAAGGCGACA ATGGCGTACC GCTGCTCGGC GACCTCCCCT GGATCGGCAA CCTGTTCAAG
TCGCAGAGCA ACAGCGAGAC GCGCACCGAA CTGATCGTGA TGATCATCCC CTACGTCGTC
CGCGACTTCG ACGAGGCCCA GGACCTCAGC CGCACCTACC GTGAGCAGTT GTCGCTGAAC
AACAGCGACA GCCTCGAACG CCGCGGCGAC CATCGCCTGC CGCCGGCCTA TGCCCCCCAT
GCCACGGAAA CCCCACCAGC CCCCGCGCAT CGCCCCTGA
|
|---|
| Protein sequence | MTRRTRPAPP ARRLPRHSLG PLALSLLLAG CAIDPNPEPL PGPLRPPMRQ EAGESTLRAE
AVRGEQAPKI PRFQTTPGQH LQQGPSYVVA SADKLGQDLT GEPITLNLNN FPLPAFINEV
FGNRLGLSFG ISPELQGKTD LISLRLSEPQ TPADLFATAR FVLSEYGVAV TEREGVLFFQ
SAQNAPNDSL PLLVSGGALP EVPMSHRPVF QQIPMRVVRS DSMVAWLKDM FAGSSLKVSS
DPLSNAVMLR GPIDLIRQAS QAIELFDRPA LKGSHSLAIS PVYASADELG TALVKVLQAE
GYDVSENPPL GGVVVLKLKE LQRLIVFAAD PAILATARQW VELLDRQSQE QVENGLFLYQ
VRNTQAAGIA SMLGALGYSA TIPDTGLNTS NTVTPTGAST GESLATSGPI RSVTGTGANA
RASAPTSIAG NPEQGSVVVD ANRNAIIYKG SGQEWLKLRP LLEELDRPVP SVIIDVLLAE
VNLNDREGLG VDWQNITGSL GSKQLIFGTA NGIGSSGLNI SALNSAGQTK ATLNAFYDNN
QAVIRSSPKL MVRSGEEATI EVGNEIPVVT GTTQSTDTDN APITQTVQYR KTGVLLNIKP
TVQASGVVDL KISQELSEST DTGTGDTLTP IINNRRVETA LTLRDGGSVM LAGLISSSKG
KGDNGVPLLG DLPWIGNLFK SQSNSETRTE LIVMIIPYVV RDFDEAQDLS RTYREQLSLN
NSDSLERRGD HRLPPAYAPH ATETPPAPAH RP
|
|---|
| |