Gene Avin_14810 details

Gene Information

• Locus tag: Avin_14810
• Symbol: rne
• ID: 7760417
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 1461734
• End bp: 1465153
• Gene Length: 3420 bp
• Protein Length: 1139 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643804379
• Product: Ribonuclease E
• Protein accession: YP_002798672
• Protein GI: 226943599
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAGAA TGCTGATTAA CGCAACTCAG CCCGAGGAGT TGCGTGTTGC CCTGGTCGAT 
GGCCAACGCC TCTATGACCT GGATATCGAA TCGGGCGCCC GCGAACAGAA GAAGGCCAAT 
ATCTACAAAG GCCGTATCAC CCGGGTCGAG CCGAGCCTCG AAGCGGCGTT CGTCGACTTC 
GGCGCCGAGC GCCACGGCTT CCTCCCGCTC AAGGAAATCT CCCGCGAGTA CTTCAAGAAG 
TCTCCCGAAG GCCGCATCAA CATCAAGGAC GTGCTCTCCG AAGGCCAGGA AGTCATTGTC 
CAGGTCGAGA AGGAAGAGCG CGGCAACAAG GGCGCGGCCC TGACCACCTT CATCAGCCTC 
GCCGGCCGCT ATCTGGTGCT GATGCCGAAC AATCCGCGAG CCGGCGGCAT CTCCCGGCGC 
ATCGAGGGCG AAGAGCGCAA CGAACTGCGC GAGGCCCTGA ACGGCCTCGA CGTGCCCGCC 
GACATGGGCC TGATCGTGCG CACCGCCGGC CTCGGCCGCT CCAGCGAAGA ACTCCAGTGG 
GACCTCGACT ACCTGGTCCA GTTGTGGACC GCGATCAAGG AAGCCTCGCT GGACCGCTCG 
CCCCCCTTCC TGATCTACCA GGAATCCAAC GTCATCATCC GGGCGATCCG CGACTATCTG 
CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCGTGGAAG CCCAGGAAGA AGCCCTGAGT 
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGATCA AGCTGTACGA AGACAGCGTG 
CCGCTGTTCA ACCGCTTCCA GATCGAGAGC CAGATCGAAA CCGCCTTCCA GCGTGAAGTG 
AAGCTGCCGT CCGGCGGCTC CATCGTCATC GATCCGACCG AAGCCCTGGT ATCCATCGAC 
ATCAACTCGG CGCGCGCCAC CAAGGGCGGC GACATCGAGG AAACCGCGCT GCAGACCAAC 
CTGGAGGCGG CCGAGGAGAT CGCCCGCCAG TTGCGCCTGC GCGACATCGG CGGCCTGATC 
GTCATCGACT TCATCGACAT GACGCCGGCG AAGAACCAGC GCGCCGTCGA GGACAAGATG 
CGCGAGGCCT TGGAGGCCGA CCGTGCGCGC GTGCAGATCG GCCGTATCTC GCGCTTCGGT 
CTGCTGGAAA TGTCCCGTCA GCGCCTGCGC CCCTCCCTCG GCGAGACCAG CGGCATCGTC 
TGCCCGCGTT GCAGCGGCCA GGGCATCATC CGCGACGTCG AATCCCTGTC CCTGGCGATC 
CTGCGCCTGA TCGAGGAAGA GGCCCTGAAG GACCGCACCG CCGAAGTGCG CGCCCAGGTG 
CCGATTCCGG TCGCCGCCTT CCTGCTCAAC GAAAAGCGCA ACTCCATCAC CAAGATCGAG 
CTGCGCACCC GCGTGCGCAT CGTCATCCTG CCGAGCGATC ACATGGAGAC GCCCCACTTC 
GAAGTACAGC GCCTGCGCGA TGACAGCCCG GAAGTGCAGA GCGCCCAGTC GAGCTACGAA 
ATGACCCCGG CGGAAGTGGA GGAAGTCCAA CTGGTCAGCT CCACCCGCAC CCTGGTGCGC 
CAGGAGGCTG CGGTCAAGAC CGCTCCGCCG CGCAACGCCC TGGTGCCGGT TCCGGCCGAA 
ATACCGGCGG CGCCGGCGGC AGCCCCCCAC CCGGCCTTGG AGCTCAATCT GTTCAAGGGA 
CTGGTGAAGT CGCTGGTCAG CCTGTTCGCC GGCAAGGAAA TCGCCAAGCC CGTTGTCGCC 
GAGCGCCTGG TCGAGGAGCG CCTGACGCGC AGCAGCGAGG AACGCCGCAG CAGCCGCCAG 
CAGAATCGTC GCCGCGAGAG CCGTCATGGC CGCGACGAGG AGCGCAGCAG GCCACGCGAG 
GAGCGTCAAC TTCGCGAAGT GCGCGAAGAA CGGGTGCCGC GCCCGGCACG CGAGGAACGC 
CCGGCACGCG AAGAGCGTCA CCCCAGCGAG TTCGTGGAAC CCCGGGAGCC ACGGGAAAGC 
CGCCGCGAGC GCCCGCCCCG CGAGGAGCGT GCGCCACGCG AAGAGCGCCA GGCCGTGGAA 
ACCATGGAGC CGCGCGAACC GCGCGAGCCA CGGGAAACCC GCCGCGAGCG CCCGCCCCGC 
GAAGAACGCC GCCGCGAACT GCGCGAACCG CTCGATATCC AGGAAATCCA GGAAAGCCCG 
CGGGAAGAGC GCACTGTCCG CCCGCCGCGC GAGGAGCTTC CCCAGCGGGA AGAGCGTCAG 
CCCCATGAAG AACGTCCGGT GGTGAACGAG CCGAAGATTC CCGAGGAGCA AGTGCTGCCC 
CACGAGGAAA TTCAGGAAGA AGAGGCCGAG GCCAGTGGCG AGGAGCGTCC CCGCCGTCGA 
TCCCGCGGCC AGCGCCGCCG CAGCAATCGC CGCGAGCGCC AGCGCGACGG CCAGGGCAGC 
GAAATCGAGG GCGTCGAAGA AGACGAGGCC GCTGCCGTCG CGGCGGAGTC CACGGCCGCA 
ACGGTAAGCG CCGTACCGGC CCAGGCCGAC GAAGCCACGG CGGAAGCCTC CACCACTGCC 
AGCCCGCCCA GCGGTCAGCC GGCAGTCGAG GAAACTCAAC CCGCAATCGA AACCGTCGCG 
ATCGCTGCTC CCGTCGCCGA GACCGCCCCT GTGGAAATTC CGCAGCCCAT CCTCCAGCCC 
GAACAGGTAC AACCTGCCGG AGCCGAGGAG CCGGTAGCCG AGCCGAGCGA GGCACTGCAA 
GTACCTGCGC AGCCGGTCCA GGAGCCGCCG GCAACCACCG AGCCCTCGGC CGAGGTTGAG 
GTTCCGCGCA GCACCGCCCG CGCGGCCAAC GACCCACGCG AAGTCCGGCG CCGCAAGCGC 
GAAGCTGCCG AGGCGGAAGC CAAGCGGGCC GCCGAAGCCA CGAAGGCAGC GGAAGCCGCA 
AAGATTGCGG AGGCCAGCGC CATCGCTGCC GCCGCGGCGG TAACCGAGAC GCGGGCGGAG 
GCCGGCCCCG TTCCGGTCGC CAGCACGCCG GAAGCACCGG AGGAAAGGAT CGAGATCCCG 
CTCGAACAGC CTCGGACCGC CAGCGAGCCA TCTCCGGCAT CCATGGAATC GGTCGAATTG 
CCGAGCGAGC AGGTCAGTCC CGAGCCGGAA GCCTTCTCCA CGGTTGCCGA ACCGGTCGAG 
GCTCCGTTCG AGCTGATACA GCCGGAGGTA CCGGCTGCCG TCGCAGCGGA AGAACCGATC 
GAAACGACGT CCGAGCAATC GGCTCCCGTG GAGGAAGAGC GCTCCGAAGA TCGGAAAGAG 
CAGCAGACGC TCGACCTCCT GCCCGTCGCC GGGCAACCGG AAGAGCTCGT CGACGAAGCG 
CAGATCGCTC CCGGAGTGGA AAACGAGGAG GTTGCCGAGC CTCGGCGCAA GGAAGCCGAA 
AGCGGGAATG CGACCGCCGA GGCGAAGCTG ACCGACGAAC AGGATCGGAC GGCTGGCTGA 

 

Protein sequence

MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGRITRVE PSLEAAFVDF 
GAERHGFLPL KEISREYFKK SPEGRINIKD VLSEGQEVIV QVEKEERGNK GAALTTFISL 
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLDVPA DMGLIVRTAG LGRSSEELQW 
DLDYLVQLWT AIKEASLDRS PPFLIYQESN VIIRAIRDYL RQDIGEVLID SVEAQEEALS 
FIRQVMPQYA SKIKLYEDSV PLFNRFQIES QIETAFQREV KLPSGGSIVI DPTEALVSID 
INSARATKGG DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEDKM 
REALEADRAR VQIGRISRFG LLEMSRQRLR PSLGETSGIV CPRCSGQGII RDVESLSLAI 
LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRVRIVIL PSDHMETPHF 
EVQRLRDDSP EVQSAQSSYE MTPAEVEEVQ LVSSTRTLVR QEAAVKTAPP RNALVPVPAE 
IPAAPAAAPH PALELNLFKG LVKSLVSLFA GKEIAKPVVA ERLVEERLTR SSEERRSSRQ 
QNRRRESRHG RDEERSRPRE ERQLREVREE RVPRPAREER PAREERHPSE FVEPREPRES 
RRERPPREER APREERQAVE TMEPREPREP RETRRERPPR EERRRELREP LDIQEIQESP 
REERTVRPPR EELPQREERQ PHEERPVVNE PKIPEEQVLP HEEIQEEEAE ASGEERPRRR 
SRGQRRRSNR RERQRDGQGS EIEGVEEDEA AAVAAESTAA TVSAVPAQAD EATAEASTTA 
SPPSGQPAVE ETQPAIETVA IAAPVAETAP VEIPQPILQP EQVQPAGAEE PVAEPSEALQ 
VPAQPVQEPP ATTEPSAEVE VPRSTARAAN DPREVRRRKR EAAEAEAKRA AEATKAAEAA 
KIAEASAIAA AAAVTETRAE AGPVPVASTP EAPEERIEIP LEQPRTASEP SPASMESVEL 
PSEQVSPEPE AFSTVAEPVE APFELIQPEV PAAVAAEEPI ETTSEQSAPV EEERSEDRKE 
QQTLDLLPVA GQPEELVDEA QIAPGVENEE VAEPRRKEAE SGNATAEAKL TDEQDRTAG