| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_14570 |
|---|
| Symbol | mfd |
|---|
| ID | 7760393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1435934 |
|---|
| End bp | 1439383 |
|---|
| Gene Length | 3450 bp |
|---|
| Protein Length | 1149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643804355 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_002798648 |
|---|
| Protein GI | 226943575 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGTAT TGCGTTTTCC GACCCTGCCG GCGGCCCCCG GCAAACAACA CTGGGGCAAC
CTGCCGGGCA CGGCGCTTCC CCTGGCGATC GCCGAAGCCG CCAGCGCCGC GGCCAAGCGC
TTCACCCTGC TCCTGACCGC CGACAGCCTG AGCGCCGAAC GCCTGGAACA GGATCTCCGC
TTCTTCGCCC CGGAGCTTCC GGTGCTGCAA TTCCCGGACT GGGAAACCCT GCCCTACGAC
CTCTTCTCGC CGCACCAGGA TATCGTCTCG CAGCGCATCG CCAGCCTCTA CCGCCTGCCG
GAACTGAACC ACGGCGTGCT GGTGGTGCCG ATCACCACCG CCCTGCACCG TCTGGCGCCG
AAGCCTTTCC TGCTGGGTAG CAGCCTGGTG CTGGACGTCG GCCAGCGGCT CGATGTGGAA
CAGATGCGCC AGCGCCTGGA AGCGGCCGGC TACCGCTGTG TGGAAACCGT CTACGAACAC
GGCGAATTCG CCGTGCGCGG CGCCCTGATC GATCTCTTTC CCATGGGCAG CGAGCGCCCC
TACCGCATCG ACCTGTTCGA CGACGAGATC GAGACCCTGC GCACCTTCGA CCCGGAGACG
CAGCGCTCGA TCGACAAGGT CGAGTCGGTA CGTCTGCTGC CGGCCCGCGA ATTCCCGCTG
CGCAAGGAAG CGGTCGCCGC CTTTCGCGCC CGCTTCCGCG AGCGTTTCGA CGTCGACTTC
CGCCGCTGCC CGATCTACCA GGACCTCGCC AGCGGTATCA CCCCGGCCGG CATCGAGTAC
TACCTGCCGT TGTTCTTCGA GGAAACCGCC ACCCTCTTCG ACTACCTGCC GTCCACCACC
CAGGTGTTCT CCCTGCCCGG CATCGAACAG GCCGCCGAGC ACTTCTGGAG CGACGTGCGC
AACCGCTACG AGGAGCGCCG CCTCGATCCG GAACGGCCGC TGCTGCCGCC CGCCGAGCTG
TTCCTGCCGG TGGAGGACTG TTTCGCACGC CTGAAGAGCT GGCCCCGGGC GATCGTCTCG
GCCGAAGAGA TCGAACCCGG TGTCGGCCGC GAGCGCCTGC CCGCACGCGC GCTGCCGTCG
CTGGCGATCG ACGCCAGGGC TGGCCAGCCG CTGGCGGCCC TGGCCGGTTT CCTCGACGGC
TTCCCGGGCC GCGTGCTGTT CACCGCCGAG TCGGCCGGAC GCCGCGAAGT GCTTCTGGAA
CTGCTCGCAC GCCTGAACCT GCGCCCGCAG AGCGTCGACG GCTGGCCGGG CTTTCTCGCC
GCCACGGAGC GCCTGGCCAT CGCCATCGCC CCGCTGGACG AGGGCCTGCT GCTCGACGAG
CCCGCCCTGG CATTGATCGC CGAGAGCCAA TTGTTCGGTC AGCGGGTGAT GCAGCGCCGG
CGCCGGGAAA AGGCGCGCGA CGGCGGCGAC AACGTCATCA AGCACCTCAC CGAACTGCGC
GAGGGTGCGC CTGTGGTGCA TATCGACCAC GGCATCGGCC GCTACCGCGG GCTGGTCACC
CTGGAGGTCG AGGGCCAGGC CGCCGAGTTC CTCATGCTGG AGTACGCCGA GGAAGCCAAG
CTCTACGTAC CGGTGGCCAA CCTGCATCTG ATCGCCCGCT ACACCGGCAG CGACGACGCC
CTCGCCCCGC TGCACCGGCT GGGCTCGGAG CAATGGCAGA GGGCCAAGCG CAAGGCCGCC
GAGCAGGTCC GCGACGTCGC CGCCGAGCTG CTCGACATCT ATGCCCGGCG CGCCGCCCGC
GCGGGCTTCG CCTTCAAGGA CCCGGCCACC GACTACGAAA CCTTCAGCGC CAGCTTCCCC
TTCGAGGAAA CCCCCGACCA GCAGGCCGCC ATCGACGCGG TGCGCACCGA CATGCTGGCG
CCCCGGCCGA TGGATCGCCT GATCTGCGGC GACGTCGGCT TCGGCAAGAC CGAAGTGGCC
ATGCGCGCCG CCTTCATCGC CGTGCATAGC GGCAGGCAGG TCGCGGTGCT GGTGCCGACC
ACCCTGCTCG CCCAGCAGCA CTACAACAGC TTTCGCGACC GCTTCGCCGA CTGGCCGGTG
AAGGTCGAGG TGATGAGCCG CTTCAAGTCG GCCAAGGAAG TCGAAGGCGC CATCGCCGCA
CTGGCCGAAG GCAAGATCGA CATCGTCATC GGCACCCACA AGCTCCTGCA GGACGACGTC
AGCTTCAAGA ACCTGGGCCT CGCCATCATC GACGAGGAAC ACCGCTTCGG CGTGCGCCAG
AAGGAGCAGC TCAAGGCCTT GCGCAGCGAG GTGGACATCC TCACCCTGAC CGCCACGCCG
ATCCCGCGCA CCCTGAACAT GGCCGTCGCC GGCATGCGCG ATCTGTCGAT CATCGCCACC
CCGCCGGCGC GCCGACTGTC GGTACGCACC TTCGTCATGG AGCAGCAGAA CACCCTGATC
CGCGAGGCGC TGCTGCGCGA GCTGCTGCGC GGCGGCCAGG TTTACTACCT GCACAACGAG
GTGAAGACCA TCGAGAAATG CGCCCGCGAA CTGGCCGAAC TGGTGCCCGA GGCACGCATC
GCCATCGGTC ACGGGCAGAT GCGCGAGCGC GAACTGGAAC AGGTGATGGG CGACTTCTAC
CACAAGCGCT TCAACGTACT GGTGGCCTCG ACCATCATCG AGACCGGCAT CGACGTGCCC
AGCGCCAACA CCATCGTCAT CGAACGCGCC GACAAGTTCG GCCTGGCCCA GTTGCACCAG
TTGCGCGGCC GGGTCGGTCG CAGCCACCAC CAGGCCTATG CCTACCTGCT CACCCCGCCG
CGCAAGCAGA TGACCGAGGA CGCGCAGAAG CGCCTGGAAG CCATCGCCGG CGCCCAGGAC
CTCGGCGCCG GCTTCGTCCT GGCCACCCAC GACCTGGAGA TCCGCGGCGC CGGCGAACTG
CTCGGCGAGG GCCAGAGCGG CCAGATCCAG GCGGTCGGCT TCACCCTCTA CATGGAAATG
CTCGAGCGCG CGGTCAAGGC CATCCGCAAG GGCGAGCAGC CGAACCTCGA GCAGCCGCTG
GGCGGCGGCC CGGACATCAA CCTGCGGGTT CCGGCGCTGA TCCCCGAAGA CTACCTGCCG
GACGTGCACG CCCGCCTGAT CCTCTACAAG CGCATCGCCT CGGCGAGCGC AGAGGAAGAA
CTCAATGAAC TGCAGGTGGA GATGATCGAC CGCTTCGGTC TCCTGCCCGA GCCGACCAAG
CACCTGATGC GCCTGACCCG CCTGAAGCTG CAGGCGGAAC GGCTCGGCAT CGCCAAGATC
GATGCCGGCC CCCAGGGCGG ACGCATCGAA TTCGCCGCCC ACACCTGCGT CGATCCGTTG
GTGCTGATCA AGCTGATCCA GAGCCAGCCG AGCCGCTACA AGTTCGAAGG CGCCACCCTG
CTCAGGTTCC AGATACCCAT GGAACGCCCG GAAGAACGCT TCAACACCCT CGAGGCGCTG
CTCGAGCGCC TGACTCCGCC ATCCGCGTAA
|
|---|
| Protein sequence | MSVLRFPTLP AAPGKQHWGN LPGTALPLAI AEAASAAAKR FTLLLTADSL SAERLEQDLR
FFAPELPVLQ FPDWETLPYD LFSPHQDIVS QRIASLYRLP ELNHGVLVVP ITTALHRLAP
KPFLLGSSLV LDVGQRLDVE QMRQRLEAAG YRCVETVYEH GEFAVRGALI DLFPMGSERP
YRIDLFDDEI ETLRTFDPET QRSIDKVESV RLLPAREFPL RKEAVAAFRA RFRERFDVDF
RRCPIYQDLA SGITPAGIEY YLPLFFEETA TLFDYLPSTT QVFSLPGIEQ AAEHFWSDVR
NRYEERRLDP ERPLLPPAEL FLPVEDCFAR LKSWPRAIVS AEEIEPGVGR ERLPARALPS
LAIDARAGQP LAALAGFLDG FPGRVLFTAE SAGRREVLLE LLARLNLRPQ SVDGWPGFLA
ATERLAIAIA PLDEGLLLDE PALALIAESQ LFGQRVMQRR RREKARDGGD NVIKHLTELR
EGAPVVHIDH GIGRYRGLVT LEVEGQAAEF LMLEYAEEAK LYVPVANLHL IARYTGSDDA
LAPLHRLGSE QWQRAKRKAA EQVRDVAAEL LDIYARRAAR AGFAFKDPAT DYETFSASFP
FEETPDQQAA IDAVRTDMLA PRPMDRLICG DVGFGKTEVA MRAAFIAVHS GRQVAVLVPT
TLLAQQHYNS FRDRFADWPV KVEVMSRFKS AKEVEGAIAA LAEGKIDIVI GTHKLLQDDV
SFKNLGLAII DEEHRFGVRQ KEQLKALRSE VDILTLTATP IPRTLNMAVA GMRDLSIIAT
PPARRLSVRT FVMEQQNTLI REALLRELLR GGQVYYLHNE VKTIEKCARE LAELVPEARI
AIGHGQMRER ELEQVMGDFY HKRFNVLVAS TIIETGIDVP SANTIVIERA DKFGLAQLHQ
LRGRVGRSHH QAYAYLLTPP RKQMTEDAQK RLEAIAGAQD LGAGFVLATH DLEIRGAGEL
LGEGQSGQIQ AVGFTLYMEM LERAVKAIRK GEQPNLEQPL GGGPDINLRV PALIPEDYLP
DVHARLILYK RIASASAEEE LNELQVEMID RFGLLPEPTK HLMRLTRLKL QAERLGIAKI
DAGPQGGRIE FAAHTCVDPL VLIKLIQSQP SRYKFEGATL LRFQIPMERP EERFNTLEAL
LERLTPPSA
|
|---|
| |