| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_14360 |
|---|
| Symbol | |
|---|
| ID | 7760372 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | + |
|---|
| Start bp | 1417138 |
|---|
| End bp | 1418661 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643804334 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_002798627 |
|---|
| Protein GI | 226943554 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.10675 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTAC CGTCCCTTTT CTTGCGTATC CGGCCGCTGA CCCTGGCGCT GACCCTCGGC
GGGCTGAGCG GCTGCATGCT CGGCCCGGAC TACCAGCGCC CGGCTGTGAG CATGCCGGTC
GACTACAAGG AGGCCGCCGG CTGGAAGGCC GCCACACCGC GCGACGGCGA GGCGCGCGGC
GACTGGTGGC GGGTCTATGG CGACGCGCGG CTCGACGCGC TGCTGGTCCA GGTGGAAGTC
TCCAACCAGA ACGTGGCGCA GTACCTGGCC CAGTACGCCC AGGCGCTGGC CCTGACCGGA
CAGTCGCGGG CGGACCTGTT TCCTTCCCTG CGGGGCAGCG CCGGCATGAC CCGCAGCGGC
TCGGGCGGCG GCACCTACCT GACCTCCAGC ACGGGCTCCT CCACCAGCAG CGCTACCGGC
AGCAGCGGCA GCGAAGGCGT CACCCAGAGC AGCAGCCGCA GCGTGTCGGG CATCAGCGAC
AACTACTCCG CGCAGCTCAG CCTGAGCTGG GAACTGGACC TGTGGGGCAA GCTGCGCCGC
ACCCTGGAGG AGGACCGCGC CAGCGCCGAG GCCAGCGCCG CCGAACTGGC CGACGCCACC
CTGAGCGCGC AGTCCAGCCT GGCGCAGAAC TATTTCCAGC TCCGCGTGCT GGACGAGCGT
ATCAGGCTCT ACGACATCAA CATCCGCTCC TATGAGCGCT ACCTGCGGGT GGTGCGCGAC
CAGTACGAGG AAGGCCAGAC CTCGCGGGCC ACCCTGGCCC AGGCGGAAAC CCAACTGGAA
TCGGCGCGCG CCTCGTCCCT GGACCTGCGC TGGCAGCGCG CCCAGTACGA GCACGCCATC
GCCATCCTGA TCGGCAAGGC GCCGGCGGAG TTCTCCCTGC CGGTGGCGGA GCGCTTCGAA
CAGCGGATTC CCGAGACCTC GGCCGGCGTG GCCTCCAGCC TGCTGGAGCG GCGCCCGGAT
ATCGCCGCCG CCGAGCGCGA CGTGGCGGCG GCGAACGCCG CCATCGGCGT CGCCAAGAGC
GGCTATTTCC CCGACCTGAC TCTGAGCGCC AGCGGCGGCT TCCAGGATTC CGGCACCAAG
AAACTGTTCA CCGTGGCCAA CCGCTTCTGG TCCATCGGTC CCTCGTTCAG CCAGACGCTG
TTCGACTTCG GCTCCACCCG CGCCGAGGTC GCCCAGGCCC GCGCCAGCTA CGACGCCGCC
GTGGCGACCT ACCGGCAGAC GGTGCTGGAC GCCTTGGGCG AGGTGGAGGA CTACCTGGTC
GAACTGCGTA CCCTGGAAAC CGAACTGGCC GCCCGGCGCC GGGCGGCGGA CGCGGCCCGG
GAATCCGAAC GGGTCACCTA CGACCAGTAC GAGGAAGGGA TGATCGACTA CCTGGACGTG
GCGACCACCC AGAACACCAG CCTGAGCGAG CAGCAGAGCG TGCTGCAACT GGTCGGCACC
CAACTGGTGG CCAGCGTGCA ACTGATCGTG GCGCTGGGCG GCGGTTGGCA GAATGAAACG
GAGGCGCCGG CCACGGCTCG CTGA
|
|---|
| Protein sequence | MALPSLFLRI RPLTLALTLG GLSGCMLGPD YQRPAVSMPV DYKEAAGWKA ATPRDGEARG
DWWRVYGDAR LDALLVQVEV SNQNVAQYLA QYAQALALTG QSRADLFPSL RGSAGMTRSG
SGGGTYLTSS TGSSTSSATG SSGSEGVTQS SSRSVSGISD NYSAQLSLSW ELDLWGKLRR
TLEEDRASAE ASAAELADAT LSAQSSLAQN YFQLRVLDER IRLYDINIRS YERYLRVVRD
QYEEGQTSRA TLAQAETQLE SARASSLDLR WQRAQYEHAI AILIGKAPAE FSLPVAERFE
QRIPETSAGV ASSLLERRPD IAAAERDVAA ANAAIGVAKS GYFPDLTLSA SGGFQDSGTK
KLFTVANRFW SIGPSFSQTL FDFGSTRAEV AQARASYDAA VATYRQTVLD ALGEVEDYLV
ELRTLETELA ARRRAADAAR ESERVTYDQY EEGMIDYLDV ATTQNTSLSE QQSVLQLVGT
QLVASVQLIV ALGGGWQNET EAPATAR
|
|---|
| |