Gene Avin_12810 details

Gene Information

• Locus tag: Avin_12810
• Symbol: lptA
• ID: 7760223
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: -
• Start bp: 1247838
• End bp: 1248392
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643804183
• Product: LPS transport protein LptA
• Protein accession: YP_002798482
• Protein GI: 226943409
• COG category: [S] Function unknown
• COG ID: [COG1934] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03002] lipopolysaccharide transport periplasmic protein LptA

Plasmid Coverage information

• Num covering plasmid clones: 30
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGGTTCG CTAACCGTTT TTCCCACCGG GCCCTCCCTC TCCTGCTCAG CCTGCCCCTG 
CTGGGGGCGG CGAGCGCCTG GGCCCTCTCA TCCGATCGCG ACCAGCCGAT TCGCGTCCAG 
GCCGACAGCG CCGAACTCGA TGACAAGCAA GGGGTCGCGG TCTACCACGG CGACGTGGTG 
ATCACTCAGG GCACGCTGAA GATCACCGGC AACAAGGTCA CCATCACCCA GGACGACAAT 
GGCGACATCA AGGTCTTCAC CTCGGTCGGC AATCCGGCCT ACTACGAGCA GAAGCCGGCG 
CCCGACAAGA GCGTCGTCAA GGCCTACGGT CAGACCATCC AGTATTTCGC CGAAAACGAA 
CGCATCGTGT TGATCGACAA GGCTCGCGTG ATCCAGGACG GCAACACCTT CGAAGGGGAG 
AAGATCGTCT ACGACACCCA GCGCCAGATC GTCAACGCAG GTCGCGCCAC GGGGGCCAAG 
GTAACCAGCC CGAAGCCGCG GATCGACATG GTCATTCAAC CGAAAAAGAA ACAGCAGCCA 
GGACAGACAC AGTAA 

 

Protein sequence

MRFANRFSHR ALPLLLSLPL LGAASAWALS SDRDQPIRVQ ADSAELDDKQ GVAVYHGDVV 
ITQGTLKITG NKVTITQDDN GDIKVFTSVG NPAYYEQKPA PDKSVVKAYG QTIQYFAENE 
RIVLIDKARV IQDGNTFEGE KIVYDTQRQI VNAGRATGAK VTSPKPRIDM VIQPKKKQQP 
GQTQ