| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_12800 |
|---|
| Symbol | lptB |
|---|
| ID | 7760222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1247113 |
|---|
| End bp | 1247838 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643804182 |
|---|
| Product | LPS transport protein LptB |
|---|
| Protein accession | YP_002798481 |
|---|
| Protein GI | 226943408 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCC TCAAAGCCCA GCATTTGGCC AAAAGCTACA AGGGCCGCCA GGTCGTCCGC
GACGTCAGCC TCTCCATCGA GAGCGGCCAG ATCGTCGGCC TGCTCGGTCC CAACGGCGCA
GGCAAGACCA CCTGTTTCTA CATGATCGTC GGCCTGGTCC GTGCCGATCA GGGGCGTATC
CTGGTCGATC AGGACGATGT AACCCATCTC CCCATGCACG GCCGCGCCCG GGTGGGTATC
GGCTACCTGC CCCAGGAGGC TTCGATCTTC CGCAAGCTCA CGGTGGCCGA CAACATCATG
GCGATTCTCG AAACGCGCAA GGATCTCGAC AAAGAAGGCC GCCGCCAGGC GCTCGAAGCC
CTGCTGCAGG AGTTCCACAT CAGCCATATT CGCGACAGCC TCGGCATGAG CCTCTCCGGC
GGCGAACGGC GTCGCGTCGA GATCGCCCGC GCCCTGGCCA CCACACCGAA GTTCATCCTG
CTCGACGAAC CCTTTGCCGG CGTCGACCCG ATCTCGGTGA ACGATATCAA GCAGATCATC
CACCACCTCA AGAACAAGGG CATCGGCGTC CTGATCACCG ACCATAATGT CCGTGAAACG
CTGGATATCT GCGAAACCGC CTACATTGTC AACGATGGAC AATTGATAGC CGAAGGCGAC
GCCGAGGCCG TCCTCACCAA CAAACTGGTG CAGGAGGTCT ATCTCGGCCA CGAATTCCGA
CTATGA
|
|---|
| Protein sequence | MATLKAQHLA KSYKGRQVVR DVSLSIESGQ IVGLLGPNGA GKTTCFYMIV GLVRADQGRI
LVDQDDVTHL PMHGRARVGI GYLPQEASIF RKLTVADNIM AILETRKDLD KEGRRQALEA
LLQEFHISHI RDSLGMSLSG GERRRVEIAR ALATTPKFIL LDEPFAGVDP ISVNDIKQII
HHLKNKGIGV LITDHNVRET LDICETAYIV NDGQLIAEGD AEAVLTNKLV QEVYLGHEFR
L
|
|---|
| |