| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_12790 |
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| Symbol | rpoN |
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| ID | 7760221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Azotobacter vinelandii DJ |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012560 |
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| Strand | - |
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| Start bp | 1245473 |
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| End bp | 1246939 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643804181 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_002798480 |
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| Protein GI | 226943407 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCGC AGCTGCAACA AGCCATCCGT CTGCTTCAAC TGTCGACCCT GGATCTGCAG
CAGGAAATCC AGGAGGCCCT CGACTCCAAT CCCATGCTGG AACGTCAGGA GGACGCCGAG
GACTACGACA GCCCGGATAT GCTGGGCGAG CATGGAGACC AGTCGACGCT CGACACCACG
CCCGGCTCTT ACCAGGAAGG CTACGAGAGC GGGGCGGCCA GCGAGGATGG CGGTACCCTC
GAAGAGGGCG ACTGGCACGA GCGGATTCCC AGCGAGCTGC CGGTGGATAC CGCCTGGGAA
GACATCTACC AGACCAGTGC CAGCAACCTG CCGAGCACCG ATGAAGACGA GTGGGACTTC
ACCACCCGCA CCTCCACGGG CGAGAGCCTG CAGAGCCATC TGCTCTGGCA GTTGAACCTG
ACCCCGATGT CGGATACCGA TCGCCTGATC GCCGTCACTC TGATCGACAG CATCAACAGC
GACGGCTATC TGGAGGCCGC CCTGGAGGAA ATCCTCGCCT CTCTGGACCC GGAACTGGGA
GTCGAACTCG ACGAAGTGGA AATGGTGCTG CGCCGCATCC AGCAATTCGA ACCGGCCGGG
ATCGCTGCCC GCGACCTCAG CGAATCGCTG CTGCTGCAAC TGCGCCAGCT ACCGCCCGAT
ACCCCCTGGC TGGAAGAGGC GAAACGACTG GCCAAGGACT ATCTCGACCT GCTGGGTAAC
CGCGACTTCA CCCAGTTGAT GCGACGCATG AAACTCAAGG AAGAAGAATT GCGTCCGGTG
ATCGAGCTGA TCCAGAGCCT CAACCCTCGT CCCGGGGCCC AGATCGAGAG CAGCGAGCCC
GAATATGTCG TGCCTGACGT CATCGTGCGC AAGCACAACG ACCGCTGGCT GGTGGAGCTC
AATCAGGAGG CGGTGCCGCG CCTGCGCATC AACCCGCATT ACGCTGGCTT CATCAGACGC
GCCGACGCCA GCGCCGACAA CACCTTCATG CGCAACCAAC TGCAGGAGGC GCGCTGGTTC
ATCAAGAGCC TGCAAAGTCG CAACGAAACC CTGATGAAGG TTTCGACCCA AATCGTCGAG
CACCAGCGCG GCTTTCTCGA CTACGGCGAA GAGGCCATGA AACCGCTGGT GCTGCACGAT
ATCGCCGAGG CTGTCGGCAT GCACGAATCG ACCATCTCCA GGGTCACCAC CCAGAAATAC
ATGCACACTC CACGCGGTAT TTACGAGCTG AAGTACTTCT TTTCCAGTCA CGTCAGTACC
GCCGAAGGCG GTGAGTGCTC GTCCACGGCC ATCCGCGCCA TCATCAAGAA ATTGATTGCG
GCGGAAAATC CGAAAAAGCC ATTGAGCGAC AGCAAGATCG CTGGTTTACT GGAAGAACAA
GGCATACAGG TGGCTCGCCG TACAGTTGCC AAATACCGGG AATCGCTCAG TATTGCGCCT
TCCAGCGAAC GCAAGCGGCT TATGTAA
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| Protein sequence | MTPQLQQAIR LLQLSTLDLQ QEIQEALDSN PMLERQEDAE DYDSPDMLGE HGDQSTLDTT
PGSYQEGYES GAASEDGGTL EEGDWHERIP SELPVDTAWE DIYQTSASNL PSTDEDEWDF
TTRTSTGESL QSHLLWQLNL TPMSDTDRLI AVTLIDSINS DGYLEAALEE ILASLDPELG
VELDEVEMVL RRIQQFEPAG IAARDLSESL LLQLRQLPPD TPWLEEAKRL AKDYLDLLGN
RDFTQLMRRM KLKEEELRPV IELIQSLNPR PGAQIESSEP EYVVPDVIVR KHNDRWLVEL
NQEAVPRLRI NPHYAGFIRR ADASADNTFM RNQLQEARWF IKSLQSRNET LMKVSTQIVE
HQRGFLDYGE EAMKPLVLHD IAEAVGMHES TISRVTTQKY MHTPRGIYEL KYFFSSHVST
AEGGECSSTA IRAIIKKLIA AENPKKPLSD SKIAGLLEEQ GIQVARRTVA KYRESLSIAP
SSERKRLM
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