Gene Avin_11940 details

Gene Information

• Locus tag: Avin_11940
• Symbol: rluD
• ID: 7760136
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 1145900
• End bp: 1146910
• Gene Length: 1011 bp
• Protein Length: 336 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643804095
• Product: Pseudouridine synthase
• Protein accession: YP_002798397
• Protein GI: 226943324
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0564] Pseudouridylate synthases, 23S RNA-specific
• TIGRFAM ID: [TIGR00005] pseudouridine synthase, RluA family

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTCGAAA CCAAAGGCCA TGCCCCGCCG TTGCCGAGCA TGTCAATACA CAACGATCAG 
GCTATCAGAC TTCGCGCCGA AGTCCCCGTC GAGCTGGGCG GCCAACGCCT GGACCAGGTC 
GCCGCACAAC TCTTCGCCGA GCATTCGCGC TCGCGCCTGG CCGCCTGGAT CAAGGACGGG 
CGACTGACCG TCGATGGCGC CGCGCTGCGC CCCCGCGACA TCGTGCATGG CGGCGCGCTG 
CTCGAACTGG ATGCCGAGCA GCAGGCGCAG GGCGAGTGGA TCGCCCAGGC CATCGAACTG 
GACATCGTCC ACGAGGACGA GCAGATCCTT GTGCTGAACA AGCCGGCCGG GCTGGTCGTG 
CATCCGGCTG CCGGGCATGC CGACGGCACC CTGCTCAATG CGTTGCTGCA CCATGTGCCG 
GGGCTGGTCA ATGTGCCGCG CGCGGGCATC GTCCACCGTC TGGACAAGGA CACGACCGGC 
CTGATGGTGG TGGCCAAGAC CCTGCAGGCG CAGACCCGGC TGGTCGAGCA ACTGCAAAAG 
CGCAGTGTCA GCCGCATCTA CGAGGCCATA GTGGTCGGTG TGATCACCGC CGGCGCCACC 
ATCGATGCGC CCATCGGCCG GCATGGCCAG CAGCGCCAGC GCATGGCGGT GGTCGAGGGC 
GGCAAGCCCG CGGTCAGCCA CTACCGTGTG CTCGAACGCT TCCGTGCGCA TACCCATGCC 
CGTATCAAGC TGGAAACCGG GCGAACCCAC CAGATCCGCG TGCACATGGC GCACGTCGGC 
TATTCGCTGG TGGGCGATCC GGTCTATGGC GGGCGTTTCC GCATTCCGCC GGCGGCCAGT 
CCGACCCTGG TGCAGGCGCT TCGGGAGTTT CCGCGCCAGG CCCTGCACGC CCGCTTCCTC 
GAACTGGATC ACCCGGCCAG CGGCGAGCGC CTGAAATGGG AGGCGCCGCT GCCGGACGAT 
TTCGTCTGGC TGTTGACACT GCTGCGCCAG GACAACGAGG CGTTCGTCTG A 

 

Protein sequence

MVETKGHAPP LPSMSIHNDQ AIRLRAEVPV ELGGQRLDQV AAQLFAEHSR SRLAAWIKDG 
RLTVDGAALR PRDIVHGGAL LELDAEQQAQ GEWIAQAIEL DIVHEDEQIL VLNKPAGLVV 
HPAAGHADGT LLNALLHHVP GLVNVPRAGI VHRLDKDTTG LMVVAKTLQA QTRLVEQLQK 
RSVSRIYEAI VVGVITAGAT IDAPIGRHGQ QRQRMAVVEG GKPAVSHYRV LERFRAHTHA 
RIKLETGRTH QIRVHMAHVG YSLVGDPVYG GRFRIPPAAS PTLVQALREF PRQALHARFL 
ELDHPASGER LKWEAPLPDD FVWLLTLLRQ DNEAFV