| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_11470 |
|---|
| Symbol | |
|---|
| ID | 7760089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 1098976 |
|---|
| End bp | 1100313 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643804049 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002798351 |
|---|
| Protein GI | 226943278 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0935266 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGCC TGCACGACCT GAAGATCTAC CTCAAGGCCA ACCTCTGGCT GGTACCCATC
CTGCTGCTGA TCGGCATCCT GTTCGTCCTG GCCCTCGACC CGGCCCCGCC GACCCGCCTG
AGCCTGGCCA CCGGCCCCGA GGGCGGCGGC TACCAGGCCT TCGGCGAACA GTTGAAAGCC
CGCCTGGCCG AGGAAGGCAT CGCACTGGAA CTGATCGCCA CGGCCGGCTC GCCGGACAAC
CTCCGCCGCC TGCTCGCCGC GGACGGCCCG GTGCAGATCG CCCTGGTGCA GAGCGGCACC
GAGCGGCAGT TGACGCCGGA GGAGCACCAG CGCCTGCACG GGCTCGGCGC GCTCTACCAG
GAACCGTTGT GGCTGTTCCA GCGCCGCGAC CTCGACATCC GCGATCTGCC CGGACTGCGC
GGCAGGCGGA TCGGCCTCGG CCAGGACGGC AGCGGTACCC AGGCGGTGGT CCTCGGCCTC
CTCGAGGCCA GCGATATCGC GCGGGAGCCG GACTGGCTGG CCCTCGGTGG CCGGCAGGCG
AGCGCCGCGC TCGAAAACGG CAGCCTGGAC GCGGCCTTCT TCGTCGGACC GCCGGAAAAT
GCCCTGATCC AGGCGCTGGC GCGCAATCCC GCGCTGCGCC TGGCCGACCT GCGCCGCGCC
GCGGCCTACC AGGCGCACCT GCCCTACCTC AAGACGCTGC CCCTGCCGGA AGGGCTGCTC
GATCTGGCCC ACAACAGCCC CGACCGGCCG CTCACCACCC TGTCGCCGGT GGCCACCCTG
GTCGCCAACC ATGGCCTGCA CCCGGCGCTG ACCCCGCTGC TGCTGGAAAG CTCGCGGCGG
ATTCTCCGGC CGGGCAGCCT GATCGACCCG CCGGGCAGCT TCCCGCGTCC CGAACCGAGC
GGCTTTCCCC TGACCAAGGA GGCCGACAGC TACTACCACA GCGGCCTGCC CTACCTGCAA
CGCTTTTTGC CGTTTCGCAT CGCCTCGCTG GTCGACCGCT ACATCGTGCT GCTGATCCCC
TTCCTGGCCA TCCTGCTGCC GCTCGGCAAA CTGGTCTCGC CGCTCTACGA ATGGCGCATG
CGCGCGAGGA CCTACAAGTG GTACCGGCAT CTGCACGAGA TCGACGCGCG CATCCACGAC
GGCAGCATCC GCGGCCACGA GGCGGAGGAA ATCGCCCGCC TCCAGGAGAT GGAAAAGCGC
CTCGGCCGGG TCGAGCTGCC GCTGTCCTAC TCCCACGAGC TGTACAGCCT GCACCTGCAC
GTGCGCTACA TGATCGAACG GCTGCGCGGG ATCGCCGGCG AACAGCGGCC GCCCGAGGAA
ACGCCACGCG CGGACTAG
|
|---|
| Protein sequence | MTRLHDLKIY LKANLWLVPI LLLIGILFVL ALDPAPPTRL SLATGPEGGG YQAFGEQLKA
RLAEEGIALE LIATAGSPDN LRRLLAADGP VQIALVQSGT ERQLTPEEHQ RLHGLGALYQ
EPLWLFQRRD LDIRDLPGLR GRRIGLGQDG SGTQAVVLGL LEASDIAREP DWLALGGRQA
SAALENGSLD AAFFVGPPEN ALIQALARNP ALRLADLRRA AAYQAHLPYL KTLPLPEGLL
DLAHNSPDRP LTTLSPVATL VANHGLHPAL TPLLLESSRR ILRPGSLIDP PGSFPRPEPS
GFPLTKEADS YYHSGLPYLQ RFLPFRIASL VDRYIVLLIP FLAILLPLGK LVSPLYEWRM
RARTYKWYRH LHEIDARIHD GSIRGHEAEE IARLQEMEKR LGRVELPLSY SHELYSLHLH
VRYMIERLRG IAGEQRPPEE TPRAD
|
|---|
| |