Gene Avin_10480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvin_10480 
Symbol 
ID7759993 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAzotobacter vinelandii DJ 
KingdomBacteria 
Replicon accessionNC_012560 
Strand
Start bp993604 
End bp994188 
Gene Length585 bp 
Protein Length194 aa 
Translation table11 
GC content70% 
IMG OID643803953 
ProductECF sigma factor, FecI family 
Protein accessionYP_002798255 
Protein GI226943182 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.609538 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCGATC ACGATTCCCC TGCCGACCTC GATCCGGCGG CCGCGCCGGC GCCGGGCGAG 
GAGCAGGACT TCCTGCGGGT CTTCCTGGCC CAGCGCGAGC GGATGGAGGC CCTGGTCAGC
CGGCGGGTCG GCTGCCGCGC CACGGCGGCG GACCTCATCC AGGACCTGTT TCTGCGCTTC
TGGAAACGGC CCATGAGGCA ACTCGACGAG CCCGGCACCT ACCTGCTGCG CAGCGCACGC
AACCTGGCCA TCGACCATCT GCGCGGCGAA GGCAAGCGCA ACCGCTCGCT GGACAGCCTG
GGGCCGGAGC ACGACGGCGC GACCGCCTCG CTCGAGACGG CGCTGCAGGC CGGCGACGAA
CTGCGCCTGG TCGAGGCCGC GCTGCGCGGC CTGCCGGAGC GCACCCGTCA CATCTTCCTG
CTCAACCGCA TCCACGGACG CACCTACGGC GAGATCGCCA GGGCCATGGG ACTGTCCCAA
AGCGCCGTGG AAAAACATAT GATGCGTGCC CTAGATACCT GCAAGGCGGC TCTCGAAGCA
ACGCCCGACA GCCGCGGCGC CACGCCAGGG AACGACCGTC GATGA
 
Protein sequence
MSDHDSPADL DPAAAPAPGE EQDFLRVFLA QRERMEALVS RRVGCRATAA DLIQDLFLRF 
WKRPMRQLDE PGTYLLRSAR NLAIDHLRGE GKRNRSLDSL GPEHDGATAS LETALQAGDE
LRLVEAALRG LPERTRHIFL LNRIHGRTYG EIARAMGLSQ SAVEKHMMRA LDTCKAALEA
TPDSRGATPG NDRR