Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avin_10480 |
Symbol | |
ID | 7759993 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Azotobacter vinelandii DJ |
Kingdom | Bacteria |
Replicon accession | NC_012560 |
Strand | - |
Start bp | 993604 |
End bp | 994188 |
Gene Length | 585 bp |
Protein Length | 194 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643803953 |
Product | ECF sigma factor, FecI family |
Protein accession | YP_002798255 |
Protein GI | 226943182 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.609538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGATC ACGATTCCCC TGCCGACCTC GATCCGGCGG CCGCGCCGGC GCCGGGCGAG GAGCAGGACT TCCTGCGGGT CTTCCTGGCC CAGCGCGAGC GGATGGAGGC CCTGGTCAGC CGGCGGGTCG GCTGCCGCGC CACGGCGGCG GACCTCATCC AGGACCTGTT TCTGCGCTTC TGGAAACGGC CCATGAGGCA ACTCGACGAG CCCGGCACCT ACCTGCTGCG CAGCGCACGC AACCTGGCCA TCGACCATCT GCGCGGCGAA GGCAAGCGCA ACCGCTCGCT GGACAGCCTG GGGCCGGAGC ACGACGGCGC GACCGCCTCG CTCGAGACGG CGCTGCAGGC CGGCGACGAA CTGCGCCTGG TCGAGGCCGC GCTGCGCGGC CTGCCGGAGC GCACCCGTCA CATCTTCCTG CTCAACCGCA TCCACGGACG CACCTACGGC GAGATCGCCA GGGCCATGGG ACTGTCCCAA AGCGCCGTGG AAAAACATAT GATGCGTGCC CTAGATACCT GCAAGGCGGC TCTCGAAGCA ACGCCCGACA GCCGCGGCGC CACGCCAGGG AACGACCGTC GATGA
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Protein sequence | MSDHDSPADL DPAAAPAPGE EQDFLRVFLA QRERMEALVS RRVGCRATAA DLIQDLFLRF WKRPMRQLDE PGTYLLRSAR NLAIDHLRGE GKRNRSLDSL GPEHDGATAS LETALQAGDE LRLVEAALRG LPERTRHIFL LNRIHGRTYG EIARAMGLSQ SAVEKHMMRA LDTCKAALEA TPDSRGATPG NDRR
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