| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avin_07910 |
|---|
| Symbol | |
|---|
| ID | 7759745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Azotobacter vinelandii DJ |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012560 |
|---|
| Strand | - |
|---|
| Start bp | 748542 |
|---|
| End bp | 750950 |
|---|
| Gene Length | 2409 bp |
|---|
| Protein Length | 802 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643803709 |
|---|
| Product | intracellular signalling protein with diguanylate cyclase and phosphodiesterase activities |
|---|
| Protein accession | YP_002798011 |
|---|
| Protein GI | 226942938 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.909152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAGCC GACTCGCCCG ACTGTCCCTG CGCAAATCCC TGCCACTGCT GCTCGGCCTT
TTCGCCGTGG TCTTCACCCT GCTGCTGACC ACCCTGTACC TGCCGCGCGC CATCGACAGG
GAACTGCACG CCTGGCGCAG CCACACCGAC CAGTTGCTCG CGCTGCTGCA GAACACCCTG
AGCGACCACC TGCGTCATGG CCGCCTCGCG GAGCTGGAAA CCGCGCTGAG CGAATTCGCC
GGGCTGCAGG GGATCCGCTG GGCCATGGTG ACCGACCCGC AACTGCAGGT ACTGGCGACC
ACCCGCCTTG GCCTCGTGCC CCGGCACCTC GGTGTCGCCG CCGAACAGCT GAAGGCCCTC
ATGGCCAGCG GCCGCCCCGC CTGGCTGGAA CATGCCGGAA GGCGCTATCT GGCCATTCTC
CCGCTCGACC GGAAGCTCCA GGGCAACACG GGAAACGGCG AGACGCTGCT GGTCGACCTG
GACTTCAATC CGCTGCTCGA CCGAACCCGT TTCGAGGCCT GGCTCTACCT CGGCCAGACC
CTCGTGCTGC TTTTGCTGCT CGGACTGCTG CTCAACCGTC TCTACCACCG CCTGATCACC
CGGCGCCTGG CGCGCATCGA CCGGGCGGCC CGGCGATTCG CCGCCGACCA CGACCAGCGG
CCGCGGCCGG CGACGGTCGA GGGCCACGAC GAGATCGGCC AGTTGGCCGG AACCTTCAAC
CGGATGATGA GCCAGTTGCA CGAGCGCCAG CAGGCCTTGC AGAACAGCGA GCGACTGATG
CGCGAGCTGT TCGACAGCTC GCCGGTGGGC ATGCTGGTGG TCAGTTGCGG CCTGTGCATC
GAGCAGGCCA ACCCGGCGGC GGCGGTGCTG TTCGGCTGCG CTCCGGCGGA CCTGCCGGGC
AAGCGTCCGC GCGATCGCCT GCTGAAAGGC GAGTCGCTCC GGCGCCTGTT GCGCACCCCG
GCCAACACAC CGGTCGAACT GACCGGCCTG TGCCAGGGGC GTGAACTGCC GCTGGAAGTC
ACCTGGACGC CCTTCGTGCG CGACGGCAGC CGGCACTATC TGCTTCTGCT GCGCGACATC
AGCGAACGCC TGCAGGCCGA GCAGCGCCTG CGTTTCCTCG CTCATTTCGA TCCGCTGACC
CACCACCTGG CCAACCGCCA CTATCTGGTC CAGCGTCTTG AACAGTTGCT GGCTACGCGG
ACGCCATTGA GCCTGCTGTT CCTCGACATC GACCACTTCA AGCGGATCAA CGACACCCTC
GGCCACGAGG TCGGCGACCA CCTGCTGGTG GAAATCGCCC GGCGCCTGAC CCGCCTGGTC
CCCGACCAGG TGCTGGTGGC CCGCTCCGGC GGCGACGAAT TCCTCCTGCT GCTGGCAAGG
CGCGCGGCGG AGCAGGCCCG GGAGCTAGCC GAGACCCTGC TGCGCGACTT CAAGACGCCG
CTGCAGGTCG GCCAGTACGA ATGCTTCCTC ACCCCCAGCA TCGGCATCGC CAACTGCGAC
GGTCAGGGCG ACGCCACCGA TCTGCTCAAG CAGGCGGACC TGGCCCTCTA CGCCGCCAAG
GACGCCGGCC GCAACCGCCT GGCCGTCTAC AGCCACCCGC TCGGCGAGGC CGCCGAGCAC
CGCCTGCAAC TGGAGCACGA GCTGCGCCGC GCCCTGGACC TGCGGGAGTT CACCCTGCAC
TACCAGGCCC AGGTCGACGA CCAGGGCCGT CCGCAGGTCA TGGAGGCCCT GCTGCGCTGG
CACTCGCCGA CCCGCGGACT GGTGCTGCCC GGCGAATTCA TCCCGGTGCT GGAAGAAAGC
GGCATGATCA TCGAAGCCAC CCGCTGGGTG TTCCGCGAGG CCTGCCGCCA GGCGCGCCGC
TGGGCCGGAC AGGGCCATGC GCTGCGCATC GCGGTCAACC TGTCGCCGCT GGATTTCCGC
CAGGCCGACC TGGCCGGCAG CCTGCTGGCC ATCCTCGAAG AGGAACGGCC CCCGACCGGC
TCGCTCGAAC TGGAAATCAC CGAGACCGCC CTGCTCGATG CCGGCGACGA CGTCCAGCAG
ACCCTGGCCC GCCTCAAGGC CGCCGGCATG CCGCTGCTGC TGGACGATTT CGGCACCGGC
CACGCCTCGC TGGCCTACCT GCAGCAGTTT CCCTTCGACG GCATCAAGAT CGACCGCCAG
TTCGTCGCCG GCCTCCCGGA AAGCGAGCAC TCGGTGGCCC TGGTGCGCGG CATCCTGACC
ATGGCCCGAC ATCTCGGCCT GCACGTGGTG GCCGAAGGGG TGAGCAACGA GCGCCAGGCC
GCCTTCCTGC GCCTCAACGG CTGCCCCAGC CTGCAGGGCT ACCACTACTG CCGCCCGCAG
CCGGCCGAAG ACCTCGAGCG CATCTGGATA CGGGAATCGT CGTCCAGCCT GCAGCCCTGG
GGACACTGA
|
|---|
| Protein sequence | MLSRLARLSL RKSLPLLLGL FAVVFTLLLT TLYLPRAIDR ELHAWRSHTD QLLALLQNTL
SDHLRHGRLA ELETALSEFA GLQGIRWAMV TDPQLQVLAT TRLGLVPRHL GVAAEQLKAL
MASGRPAWLE HAGRRYLAIL PLDRKLQGNT GNGETLLVDL DFNPLLDRTR FEAWLYLGQT
LVLLLLLGLL LNRLYHRLIT RRLARIDRAA RRFAADHDQR PRPATVEGHD EIGQLAGTFN
RMMSQLHERQ QALQNSERLM RELFDSSPVG MLVVSCGLCI EQANPAAAVL FGCAPADLPG
KRPRDRLLKG ESLRRLLRTP ANTPVELTGL CQGRELPLEV TWTPFVRDGS RHYLLLLRDI
SERLQAEQRL RFLAHFDPLT HHLANRHYLV QRLEQLLATR TPLSLLFLDI DHFKRINDTL
GHEVGDHLLV EIARRLTRLV PDQVLVARSG GDEFLLLLAR RAAEQARELA ETLLRDFKTP
LQVGQYECFL TPSIGIANCD GQGDATDLLK QADLALYAAK DAGRNRLAVY SHPLGEAAEH
RLQLEHELRR ALDLREFTLH YQAQVDDQGR PQVMEALLRW HSPTRGLVLP GEFIPVLEES
GMIIEATRWV FREACRQARR WAGQGHALRI AVNLSPLDFR QADLAGSLLA ILEEERPPTG
SLELEITETA LLDAGDDVQQ TLARLKAAGM PLLLDDFGTG HASLAYLQQF PFDGIKIDRQ
FVAGLPESEH SVALVRGILT MARHLGLHVV AEGVSNERQA AFLRLNGCPS LQGYHYCRPQ
PAEDLERIWI RESSSSLQPW GH
|
|---|
| |