Gene Avin_06500 details

Gene Information

• Locus tag: Avin_06500
• Symbol: rpoA
• ID: 7759604
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 619055
• End bp: 620056
• Gene Length: 1002 bp
• Protein Length: 333 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643803572
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: YP_002797876
• Protein GI: 226942803
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGAGTT CGGTAAATGA GTTCCTGACC CCCCGTCACA TCGACGTGCA GGCGGTCAGC 
CCGACCCGTG CCAAGATCAC GCTCGAGCCG CTCGAGCGCG GTTTTGGTCA TACCCTGGGC 
AACGCCCTGC GTCGCATCCT GCTGTCTTCC ATGCCCGGCT GTGCGGTAGT CGAGGCCGAG 
ATCGACGGCG TGCTTCATGA GTACAGCGCC ATCGAAGGAG TGCAGGAAGA TGTCATCGAG 
ATCCTGCTCA ACCTGAAGGG CCTGGCCATC AAGCTGCATG GTCGCGACGA GGTCACGCTG 
AGCCTGAGCA AGAAGGGCTC CGGTGCGGTA ACCGCTGCCG ATATTCAGCT GGATCATGAT 
GTCGAAATCG TCAATGGCGG TCATGTAATC GCCAACCTGG CGGACAACGG CGCACTGAAC 
ATGAAGCTCA AGGTGGCGCG TGGTCGTGGT TACGAGCCCG CCGATGCCCG TCAGAGTGAT 
GAGGACGAAA GTCGCAGCAT CGGTCGTCTT CAGCTCGACG CTTCCTTCAG TCCAGTCCGC 
CGTGTCGCTT ACGTGGTGGA AAACGCCCGC GTCGAGCAAC GTACGAACCT GGATAAGCTG 
GTCATCGATC TGGAAACCAA CGGTACCCTG GATCCCGAAG AGGCCATCCG CCGTGCCGCG 
ACTATTCTGC AGCAGCAATT GGCCGCGTTC GTCGACCTCA AGGGAGATAC CGCGCCAGTG 
GTGGTCGAGC AGGAAGACGA GATCGATCCG ATCCTCCTGC GTCCGGTCGA CGACCTGGAA 
CTGACCGTAC GCTCGGCCAA CTGCCTGAAG GCGGAGAACA TCTACTACAT CGGTGACCTG 
ATCCAGCGCA CCGAGGTGGA GTTGCTGAAG ACTCCGAACC TGGGCAAGAA GTCCCTGACC 
GAAATCAAGG ACGTTCTGGC TTCCCGTGGT CTGTCCCTCG GCATGCGCCT CGATAATTGG 
CCGCCTGCAA GTCTGAAGAA GGACGACAAG GCCACGGCCT GA 

 

Protein sequence

MQSSVNEFLT PRHIDVQAVS PTRAKITLEP LERGFGHTLG NALRRILLSS MPGCAVVEAE 
IDGVLHEYSA IEGVQEDVIE ILLNLKGLAI KLHGRDEVTL SLSKKGSGAV TAADIQLDHD 
VEIVNGGHVI ANLADNGALN MKLKVARGRG YEPADARQSD EDESRSIGRL QLDASFSPVR 
RVAYVVENAR VEQRTNLDKL VIDLETNGTL DPEEAIRRAA TILQQQLAAF VDLKGDTAPV 
VVEQEDEIDP ILLRPVDDLE LTVRSANCLK AENIYYIGDL IQRTEVELLK TPNLGKKSLT 
EIKDVLASRG LSLGMRLDNW PPASLKKDDK ATA