Gene Avin_06490 details

Gene Information

• Locus tag: Avin_06490
• Symbol: rpsD
• ID: 7759603
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 618412
• End bp: 619032
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643803571
• Product: 30S ribosomal protein S4
• Protein accession: YP_002797875
• Protein GI: 226942802
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCACGTT ACATTGGTCC CAAATGCAAA CTGTCCCGCC GCGAAGGCAC TGACCTGTTC 
CTGAAGAGCG GCTCCCGTGC GCTCGAGTCC AAGTGCAACG TCGAGTCGGC TCCGGGCATC 
CATGGTCAGC GCCGCGGTCG CCTGTCCGAG TACGGCACCC AACTGCGTGA GAAGCAGAAG 
GTTCGTCGCA TCTATGGCGT GCTGGAGCGC CAGTTCAGCG GTTACTACAA GGAGGCCAGC 
CGTCGCAAGG GCTCCACTGG CGAGAACCTG CTGCAACTGC TGGAGTGCCG TCTGGACAAC 
GTCGTCTATC GCATGGGCTT CGGCGCTACC CGTGCCGAGT CCCGTCAGTT GATTTCGCAC 
AAGGCCATTA CCGTCAATGG CCAGACCGTG AACATCCCTT CCTATCAGGT CAAGGTTGGC 
GATGTCGTCG CTATCCGCGA AAAGGCCAAG AACCAGCTGC GTATCGCTCA GGCTCTCGAA 
CTTTGCGCGC AGCGTGGCCG CGTCGAGTGG GTTGAAGTGG ATACCGAGAA GAAGTCTGGC 
GTGTTCAAGA GCGTGCCGGC TCGCAGTGAC CTGTCTGCCG ACATCAACGA AAACCTGATT 
GTCGAGCTCT ACTCCAAGTA A 

 

Protein sequence

MARYIGPKCK LSRREGTDLF LKSGSRALES KCNVESAPGI HGQRRGRLSE YGTQLREKQK 
VRRIYGVLER QFSGYYKEAS RRKGSTGENL LQLLECRLDN VVYRMGFGAT RAESRQLISH 
KAITVNGQTV NIPSYQVKVG DVVAIREKAK NQLRIAQALE LCAQRGRVEW VEVDTEKKSG 
VFKSVPARSD LSADINENLI VELYSK