Gene Avin_06420 details

Gene Information

• Locus tag: Avin_06420
• Symbol: rpsE
• ID: 7759596
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Azotobacter vinelandii DJ
• Kingdom: Bacteria
• Replicon accession: NC_012560
• Strand: +
• Start bp: 614894
• End bp: 615394
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643803564
• Product: 30S ribosomal protein S5
• Protein accession: YP_002797868
• Protein GI: 226942795
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.0942299
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAATA ACGAGCAAAA GCGCGACGAG GGTTACATCG AAAAGCTGGT CCAAGTCAAT 
CGCGTTGCCA AGACCGTCAA GGGTGGTCGC ATCTTTACCT TTACCGCGCT GACGGTCGTT 
GGCGACGGCA AAGGGCGTGT CGGCTTCGGC CGCGGCAAGT CCCGCGAGGT CCCTGCTGCT 
ATCCAGAAGG CCATGGAGGC TGCTCGCCGC AACATGATCC AGGTCGATCT CAGCGGCACC 
ACTCTGCAGT ATCCGGTCAA GTCCGCCCAT GGCGCTTCCC GTGTTTACAT GCAGCCGGCC 
AGCGAGGGTA CCGGAATCAT CGCCGGTGGT GCCATGCGTG CCGTCCTCGA GGTCGCAGGC 
GTACAGAACG TTCTGGCCAA GTGCTACGGC TCGACCAATC CGGTAAACGT GGTTTATGCC 
ACTTTCAAAG GACTGAAGGA AATGCAGTCC CCGGAATCCG TAGCGGCCAA GCGTGGCAAG 
AGCGTCGAGG AGATTCTCTG A 

 

Protein sequence

MANNEQKRDE GYIEKLVQVN RVAKTVKGGR IFTFTALTVV GDGKGRVGFG RGKSREVPAA 
IQKAMEAARR NMIQVDLSGT TLQYPVKSAH GASRVYMQPA SEGTGIIAGG AMRAVLEVAG 
VQNVLAKCYG STNPVNVVYA TFKGLKEMQS PESVAAKRGK SVEEIL